Strain Fitness in Escherichia coli BL21 around ECD_02548

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02547 and ECD_02548 are separated by 127 nucleotidesECD_02548 and ECD_02549 are separated by 68 nucleotides ECD_02547: ECD_02547 - alanyl-tRNA synthetase, at 2,659,347 to 2,661,977 _02547 ECD_02548: ECD_02548 - regulatory protein for RecA, at 2,662,105 to 2,662,605 _02548 ECD_02549: ECD_02549 - DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor, at 2,662,674 to 2,663,735 _02549 Position (kb) 2662 2663Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2662.046 kb on - strandat 2662.046 kb on - strandat 2662.063 kb on - strandat 2662.063 kb on - strandat 2662.063 kb on - strandat 2662.063 kb on - strandat 2662.063 kb on - strandat 2662.063 kb on - strandat 2662.063 kb on - strandat 2662.093 kb on + strandat 2662.093 kb on + strandat 2662.093 kb on + strandat 2662.093 kb on + strandat 2662.093 kb on + strandat 2662.093 kb on + strandat 2662.094 kb on - strandat 2662.098 kb on + strandat 2662.161 kb on - strand, within ECD_02548at 2662.305 kb on + strand, within ECD_02548at 2662.333 kb on - strand, within ECD_02548at 2662.403 kb on + strand, within ECD_02548at 2662.404 kb on - strand, within ECD_02548at 2662.440 kb on - strand, within ECD_02548at 2662.485 kb on + strand, within ECD_02548at 2662.503 kb on + strand, within ECD_02548at 2662.574 kb on + strandat 2662.575 kb on - strandat 2662.575 kb on - strandat 2662.611 kb on - strandat 2662.616 kb on + strandat 2662.616 kb on + strandat 2662.616 kb on + strandat 2662.617 kb on - strandat 2662.617 kb on - strandat 2662.617 kb on - strandat 2662.617 kb on - strandat 2662.617 kb on - strandat 2662.623 kb on + strandat 2662.624 kb on - strandat 2662.656 kb on - strandat 2662.656 kb on - strandat 2662.656 kb on - strandat 2662.656 kb on - strandat 2662.659 kb on + strandat 2662.659 kb on + strandat 2662.660 kb on - strandat 2662.660 kb on - strandat 2662.660 kb on - strandat 2662.660 kb on - strandat 2662.660 kb on - strandat 2662.717 kb on - strandat 2662.717 kb on - strandat 2662.717 kb on - strandat 2662.717 kb on - strandat 2662.800 kb on - strand, within ECD_02549at 2662.800 kb on - strand, within ECD_02549at 2662.856 kb on - strand, within ECD_02549at 2662.856 kb on - strand, within ECD_02549at 2662.862 kb on - strand, within ECD_02549at 2662.862 kb on - strand, within ECD_02549at 2662.862 kb on - strand, within ECD_02549at 2662.862 kb on - strand, within ECD_02549at 2662.897 kb on - strand, within ECD_02549at 2662.897 kb on - strand, within ECD_02549at 2662.897 kb on - strand, within ECD_02549at 2662.922 kb on - strand, within ECD_02549at 2662.922 kb on - strand, within ECD_02549at 2662.932 kb on - strand, within ECD_02549at 2662.932 kb on - strand, within ECD_02549at 2663.081 kb on - strand, within ECD_02549at 2663.081 kb on - strand, within ECD_02549at 2663.145 kb on - strand, within ECD_02549at 2663.225 kb on + strand, within ECD_02549at 2663.225 kb on + strand, within ECD_02549at 2663.225 kb on + strand, within ECD_02549at 2663.225 kb on + strand, within ECD_02549at 2663.225 kb on + strand, within ECD_02549at 2663.225 kb on + strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.319 kb on + strand, within ECD_02549at 2663.320 kb on - strand, within ECD_02549at 2663.320 kb on - strand, within ECD_02549at 2663.418 kb on - strand, within ECD_02549at 2663.418 kb on - strand, within ECD_02549at 2663.418 kb on - strand, within ECD_02549at 2663.418 kb on - strand, within ECD_02549at 2663.418 kb on - strand, within ECD_02549at 2663.425 kb on + strand, within ECD_02549at 2663.425 kb on + strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.471 kb on + strand, within ECD_02549at 2663.471 kb on + strand, within ECD_02549at 2663.519 kb on + strand, within ECD_02549

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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2,662,046 - -1.5
2,662,046 - -0.1
2,662,063 - +2.1
2,662,063 - +1.3
2,662,063 - +2.1
2,662,063 - +0.5
2,662,063 - +1.6
2,662,063 - +0.7
2,662,063 - +0.3
2,662,093 + +1.3
2,662,093 + +0.6
2,662,093 + +0.4
2,662,093 + +1.3
2,662,093 + -0.3
2,662,093 + +0.1
2,662,094 - +1.2
2,662,098 + -1.4
2,662,161 - ECD_02548 0.11 -0.8
2,662,305 + ECD_02548 0.40 +0.7
2,662,333 - ECD_02548 0.46 +0.3
2,662,403 + ECD_02548 0.59 +0.7
2,662,404 - ECD_02548 0.60 -2.1
2,662,440 - ECD_02548 0.67 -0.0
2,662,485 + ECD_02548 0.76 +0.1
2,662,503 + ECD_02548 0.79 -0.0
2,662,574 + -1.7
2,662,575 - -1.8
2,662,575 - +2.1
2,662,611 - -0.1
2,662,616 + -1.6
2,662,616 + +1.3
2,662,616 + -3.0
2,662,617 - +0.1
2,662,617 - -0.1
2,662,617 - +0.4
2,662,617 - +0.2
2,662,617 - +0.6
2,662,623 + -0.6
2,662,624 - +0.9
2,662,656 - -0.3
2,662,656 - -2.7
2,662,656 - -0.9
2,662,656 - -1.0
2,662,659 + -2.3
2,662,659 + -1.7
2,662,660 - +1.1
2,662,660 - -1.0
2,662,660 - +0.8
2,662,660 - -0.4
2,662,660 - -1.8
2,662,717 - -1.3
2,662,717 - -0.5
2,662,717 - -0.0
2,662,717 - -0.3
2,662,800 - ECD_02549 0.12 -0.9
2,662,800 - ECD_02549 0.12 -0.5
2,662,856 - ECD_02549 0.17 -0.9
2,662,856 - ECD_02549 0.17 +1.3
2,662,862 - ECD_02549 0.18 -0.9
2,662,862 - ECD_02549 0.18 -0.0
2,662,862 - ECD_02549 0.18 +1.3
2,662,862 - ECD_02549 0.18 -0.3
2,662,897 - ECD_02549 0.21 +2.9
2,662,897 - ECD_02549 0.21 -0.0
2,662,897 - ECD_02549 0.21 -0.3
2,662,922 - ECD_02549 0.23 -0.6
2,662,922 - ECD_02549 0.23 -0.5
2,662,932 - ECD_02549 0.24 +2.3
2,662,932 - ECD_02549 0.24 -0.5
2,663,081 - ECD_02549 0.38 -1.4
2,663,081 - ECD_02549 0.38 +1.3
2,663,145 - ECD_02549 0.44 +2.3
2,663,225 + ECD_02549 0.52 -0.3
2,663,225 + ECD_02549 0.52 +0.3
2,663,225 + ECD_02549 0.52 +0.3
2,663,225 + ECD_02549 0.52 +0.5
2,663,225 + ECD_02549 0.52 +0.3
2,663,225 + ECD_02549 0.52 +1.3
2,663,226 - ECD_02549 0.52 +1.6
2,663,226 - ECD_02549 0.52 -1.3
2,663,226 - ECD_02549 0.52 +0.2
2,663,226 - ECD_02549 0.52 +1.3
2,663,226 - ECD_02549 0.52 +1.3
2,663,226 - ECD_02549 0.52 +0.7
2,663,226 - ECD_02549 0.52 -0.9
2,663,226 - ECD_02549 0.52 +0.4
2,663,226 - ECD_02549 0.52 -0.3
2,663,226 - ECD_02549 0.52 +1.3
2,663,226 - ECD_02549 0.52 +3.9
2,663,226 - ECD_02549 0.52 +1.8
2,663,226 - ECD_02549 0.52 +3.9
2,663,319 + ECD_02549 0.61 -0.0
2,663,320 - ECD_02549 0.61 +1.3
2,663,320 - ECD_02549 0.61 +2.3
2,663,418 - ECD_02549 0.70 -0.5
2,663,418 - ECD_02549 0.70 -1.8
2,663,418 - ECD_02549 0.70 +0.7
2,663,418 - ECD_02549 0.70 +1.7
2,663,418 - ECD_02549 0.70 +0.3
2,663,425 + ECD_02549 0.71 -0.3
2,663,425 + ECD_02549 0.71 +1.3
2,663,426 - ECD_02549 0.71 +0.1
2,663,426 - ECD_02549 0.71 +0.3
2,663,426 - ECD_02549 0.71 +0.8
2,663,426 - ECD_02549 0.71 +2.3
2,663,426 - ECD_02549 0.71 +0.3
2,663,426 - ECD_02549 0.71 +0.7
2,663,426 - ECD_02549 0.71 -0.3
2,663,426 - ECD_02549 0.71 +0.3
2,663,426 - ECD_02549 0.71 +2.3
2,663,426 - ECD_02549 0.71 -1.3
2,663,426 - ECD_02549 0.71 +1.7
2,663,471 + ECD_02549 0.75 -0.5
2,663,471 + ECD_02549 0.75 -0.5
2,663,519 + ECD_02549 0.80 -0.5

Or see this region's nucleotide sequence