Strain Fitness in Escherichia coli BL21 around ECD_02448

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02446 and ECD_02447 overlap by 11 nucleotidesECD_02447 and ECD_02448 are separated by 164 nucleotidesECD_02448 and ECD_02449 are separated by 575 nucleotides ECD_02446: ECD_02446 - response regulator regulating glmY sRNA in two-component system with sensor protein GlrK, at 2,553,274 to 2,554,608 _02446 ECD_02447: ECD_02447 - putative outer membrane protein modulating the QseEF response, at 2,554,598 to 2,555,311 _02447 ECD_02448: ECD_02448 - sensor protein kinase regulating glmY sRNA in two-component system with response regulator GlrR, at 2,555,476 to 2,556,903 _02448 ECD_02449: ECD_02449 - phosphoribosylformyl-glycineamide synthetase, at 2,557,479 to 2,561,366 _02449 Position (kb) 2555 2556 2557Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2554.520 kb on + strandat 2554.520 kb on + strandat 2554.521 kb on - strandat 2554.585 kb on + strandat 2554.586 kb on - strandat 2554.599 kb on + strandat 2554.600 kb on - strandat 2554.760 kb on + strand, within ECD_02447at 2554.760 kb on + strand, within ECD_02447at 2554.786 kb on + strand, within ECD_02447at 2554.786 kb on + strand, within ECD_02447at 2554.787 kb on - strand, within ECD_02447at 2554.884 kb on + strand, within ECD_02447at 2554.916 kb on - strand, within ECD_02447at 2554.920 kb on - strand, within ECD_02447at 2554.996 kb on + strand, within ECD_02447at 2554.997 kb on - strand, within ECD_02447at 2554.997 kb on - strand, within ECD_02447at 2555.026 kb on - strand, within ECD_02447at 2555.119 kb on + strand, within ECD_02447at 2555.161 kb on - strand, within ECD_02447at 2555.218 kb on + strand, within ECD_02447at 2555.324 kb on + strandat 2555.394 kb on + strandat 2555.394 kb on + strandat 2555.394 kb on + strandat 2555.394 kb on + strandat 2555.399 kb on - strandat 2555.403 kb on + strandat 2555.404 kb on - strandat 2555.404 kb on - strandat 2555.404 kb on - strandat 2555.404 kb on - strandat 2555.445 kb on + strandat 2555.571 kb on + strandat 2555.572 kb on - strandat 2555.591 kb on - strandat 2555.709 kb on + strand, within ECD_02448at 2555.709 kb on + strand, within ECD_02448at 2555.710 kb on - strand, within ECD_02448at 2555.712 kb on - strand, within ECD_02448at 2555.712 kb on - strand, within ECD_02448at 2555.712 kb on - strand, within ECD_02448at 2555.890 kb on - strand, within ECD_02448at 2556.359 kb on - strand, within ECD_02448at 2556.623 kb on + strand, within ECD_02448at 2556.644 kb on + strand, within ECD_02448at 2556.680 kb on + strand, within ECD_02448at 2556.693 kb on + strand, within ECD_02448at 2556.694 kb on - strand, within ECD_02448at 2556.694 kb on - strand, within ECD_02448at 2556.694 kb on - strand, within ECD_02448at 2556.748 kb on - strand, within ECD_02448at 2556.748 kb on - strand, within ECD_02448at 2556.784 kb on - strandat 2556.832 kb on + strandat 2556.835 kb on + strandat 2556.836 kb on - strandat 2556.836 kb on - strandat 2556.860 kb on - strandat 2556.910 kb on - strandat 2556.960 kb on - strandat 2557.010 kb on - strandat 2557.010 kb on - strandat 2557.037 kb on - strandat 2557.037 kb on - strandat 2557.038 kb on + strandat 2557.039 kb on - strandat 2557.039 kb on - strandat 2557.039 kb on - strandat 2557.043 kb on - strandat 2557.043 kb on - strandat 2557.043 kb on - strandat 2557.043 kb on - strandat 2557.102 kb on - strandat 2557.102 kb on - strandat 2557.102 kb on - strandat 2557.150 kb on - strandat 2557.150 kb on - strandat 2557.163 kb on - strandat 2557.205 kb on + strandat 2557.402 kb on + strandat 2557.402 kb on + strandat 2557.403 kb on - strandat 2557.407 kb on + strandat 2557.421 kb on + strandat 2557.438 kb on + strandat 2557.635 kb on - strandat 2557.669 kb on + strandat 2557.702 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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2,554,520 + +0.7
2,554,520 + -0.7
2,554,521 - -0.5
2,554,585 + +0.1
2,554,586 - +0.1
2,554,599 + +0.2
2,554,600 - -1.2
2,554,760 + ECD_02447 0.23 -1.6
2,554,760 + ECD_02447 0.23 -0.4
2,554,786 + ECD_02447 0.26 +0.9
2,554,786 + ECD_02447 0.26 -1.0
2,554,787 - ECD_02447 0.26 -0.5
2,554,884 + ECD_02447 0.40 -0.1
2,554,916 - ECD_02447 0.45 -0.4
2,554,920 - ECD_02447 0.45 -1.4
2,554,996 + ECD_02447 0.56 -1.6
2,554,997 - ECD_02447 0.56 -0.0
2,554,997 - ECD_02447 0.56 +2.1
2,555,026 - ECD_02447 0.60 +1.0
2,555,119 + ECD_02447 0.73 -2.0
2,555,161 - ECD_02447 0.79 -0.2
2,555,218 + ECD_02447 0.87 -0.6
2,555,324 + +0.0
2,555,394 + -2.1
2,555,394 + -0.1
2,555,394 + +0.4
2,555,394 + +0.8
2,555,399 - -0.5
2,555,403 + -1.7
2,555,404 - -0.5
2,555,404 - -0.2
2,555,404 - -0.0
2,555,404 - -1.2
2,555,445 + -0.1
2,555,571 + -0.0
2,555,572 - -0.5
2,555,591 - -0.7
2,555,709 + ECD_02448 0.16 -0.0
2,555,709 + ECD_02448 0.16 -2.0
2,555,710 - ECD_02448 0.16 +0.0
2,555,712 - ECD_02448 0.17 -0.3
2,555,712 - ECD_02448 0.17 -1.4
2,555,712 - ECD_02448 0.17 +0.6
2,555,890 - ECD_02448 0.29 +0.3
2,556,359 - ECD_02448 0.62 +0.3
2,556,623 + ECD_02448 0.80 -0.9
2,556,644 + ECD_02448 0.82 +5.0
2,556,680 + ECD_02448 0.84 -0.5
2,556,693 + ECD_02448 0.85 -0.4
2,556,694 - ECD_02448 0.85 +0.6
2,556,694 - ECD_02448 0.85 -1.0
2,556,694 - ECD_02448 0.85 +0.6
2,556,748 - ECD_02448 0.89 +0.0
2,556,748 - ECD_02448 0.89 -1.3
2,556,784 - -1.2
2,556,832 + -2.5
2,556,835 + -0.3
2,556,836 - +0.9
2,556,836 - -0.4
2,556,860 - -0.3
2,556,910 - +0.0
2,556,960 - -0.1
2,557,010 - -0.7
2,557,010 - -1.4
2,557,037 - -1.0
2,557,037 - -0.0
2,557,038 + -0.7
2,557,039 - -1.7
2,557,039 - +1.3
2,557,039 - +0.0
2,557,043 - -1.0
2,557,043 - +0.1
2,557,043 - -0.4
2,557,043 - -1.0
2,557,102 - -1.3
2,557,102 - -1.3
2,557,102 - -0.6
2,557,150 - +0.4
2,557,150 - -0.1
2,557,163 - -0.5
2,557,205 + -0.0
2,557,402 + -2.3
2,557,402 + -0.9
2,557,403 - -0.0
2,557,407 + -0.0
2,557,421 + +0.1
2,557,438 + +0.4
2,557,635 - -0.1
2,557,669 + -1.1
2,557,702 + +0.3

Or see this region's nucleotide sequence