Strain Fitness in Escherichia coli BL21 around ECD_02427

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02426 and ECD_02427 are separated by 190 nucleotidesECD_02427 and ECD_02428 overlap by 9 nucleotides ECD_02426: ECD_02426 - putative S9 family prolyl oligopeptidase, at 2,530,195 to 2,531,049 _02426 ECD_02427: ECD_02427 - stationary phase inducible protein, at 2,531,240 to 2,532,520 _02427 ECD_02428: ECD_02428 - putative 3-phenylpropionic transporter, at 2,532,512 to 2,533,651 _02428 Position (kb) 2531 2532 2533Strain fitness (log2 ratio) -3 -2 -1 0 1at 2530.265 kb on - strandat 2530.265 kb on - strandat 2530.297 kb on + strand, within ECD_02426at 2530.298 kb on - strand, within ECD_02426at 2530.465 kb on - strand, within ECD_02426at 2530.628 kb on + strand, within ECD_02426at 2530.628 kb on + strand, within ECD_02426at 2530.629 kb on - strand, within ECD_02426at 2530.715 kb on + strand, within ECD_02426at 2530.715 kb on + strand, within ECD_02426at 2530.751 kb on - strand, within ECD_02426at 2530.751 kb on - strand, within ECD_02426at 2530.793 kb on + strand, within ECD_02426at 2530.794 kb on - strand, within ECD_02426at 2530.943 kb on + strand, within ECD_02426at 2531.025 kb on + strandat 2531.048 kb on - strandat 2531.101 kb on - strandat 2531.167 kb on + strandat 2531.218 kb on + strandat 2531.218 kb on + strandat 2531.218 kb on + strandat 2531.218 kb on + strandat 2531.218 kb on + strandat 2531.235 kb on + strandat 2531.248 kb on + strandat 2531.356 kb on + strandat 2531.375 kb on - strand, within ECD_02427at 2531.390 kb on - strand, within ECD_02427at 2531.610 kb on - strand, within ECD_02427at 2531.625 kb on + strand, within ECD_02427at 2531.626 kb on - strand, within ECD_02427at 2531.626 kb on - strand, within ECD_02427at 2531.702 kb on + strand, within ECD_02427at 2531.711 kb on + strand, within ECD_02427at 2532.015 kb on + strand, within ECD_02427at 2532.029 kb on + strand, within ECD_02427at 2532.029 kb on + strand, within ECD_02427at 2532.030 kb on - strand, within ECD_02427at 2532.030 kb on - strand, within ECD_02427at 2532.030 kb on - strand, within ECD_02427at 2532.030 kb on - strand, within ECD_02427at 2532.085 kb on + strand, within ECD_02427at 2532.114 kb on - strand, within ECD_02427at 2532.283 kb on + strand, within ECD_02427at 2532.352 kb on + strand, within ECD_02427at 2532.353 kb on - strand, within ECD_02427at 2532.353 kb on - strand, within ECD_02427at 2532.416 kb on + strandat 2532.416 kb on + strandat 2532.418 kb on + strandat 2532.419 kb on - strandat 2532.597 kb on + strandat 2532.709 kb on + strand, within ECD_02428at 2532.709 kb on + strand, within ECD_02428at 2532.771 kb on - strand, within ECD_02428at 2532.860 kb on - strand, within ECD_02428at 2532.860 kb on - strand, within ECD_02428at 2532.860 kb on - strand, within ECD_02428at 2532.930 kb on + strand, within ECD_02428at 2533.196 kb on - strand, within ECD_02428at 2533.196 kb on - strand, within ECD_02428at 2533.343 kb on - strand, within ECD_02428at 2533.373 kb on + strand, within ECD_02428at 2533.374 kb on - strand, within ECD_02428

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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2,530,265 - -1.1
2,530,265 - -0.5
2,530,297 + ECD_02426 0.12 +0.3
2,530,298 - ECD_02426 0.12 -0.3
2,530,465 - ECD_02426 0.32 +0.3
2,530,628 + ECD_02426 0.51 +0.9
2,530,628 + ECD_02426 0.51 +0.3
2,530,629 - ECD_02426 0.51 +0.5
2,530,715 + ECD_02426 0.61 -0.3
2,530,715 + ECD_02426 0.61 -0.2
2,530,751 - ECD_02426 0.65 -0.3
2,530,751 - ECD_02426 0.65 +0.7
2,530,793 + ECD_02426 0.70 -0.5
2,530,794 - ECD_02426 0.70 +1.6
2,530,943 + ECD_02426 0.87 +0.3
2,531,025 + +0.2
2,531,048 - -0.1
2,531,101 - -0.3
2,531,167 + +0.9
2,531,218 + -1.6
2,531,218 + -1.9
2,531,218 + -1.2
2,531,218 + +1.0
2,531,218 + +0.7
2,531,235 + -0.3
2,531,248 + -0.3
2,531,356 + -0.2
2,531,375 - ECD_02427 0.11 +0.3
2,531,390 - ECD_02427 0.12 -0.4
2,531,610 - ECD_02427 0.29 +0.3
2,531,625 + ECD_02427 0.30 -1.0
2,531,626 - ECD_02427 0.30 -2.8
2,531,626 - ECD_02427 0.30 -0.2
2,531,702 + ECD_02427 0.36 -1.6
2,531,711 + ECD_02427 0.37 -0.0
2,532,015 + ECD_02427 0.60 -0.7
2,532,029 + ECD_02427 0.62 +0.3
2,532,029 + ECD_02427 0.62 -1.4
2,532,030 - ECD_02427 0.62 -1.9
2,532,030 - ECD_02427 0.62 -0.2
2,532,030 - ECD_02427 0.62 +0.8
2,532,030 - ECD_02427 0.62 -0.2
2,532,085 + ECD_02427 0.66 +0.3
2,532,114 - ECD_02427 0.68 -0.8
2,532,283 + ECD_02427 0.81 -1.1
2,532,352 + ECD_02427 0.87 -2.8
2,532,353 - ECD_02427 0.87 +0.2
2,532,353 - ECD_02427 0.87 +0.3
2,532,416 + -0.9
2,532,416 + -1.0
2,532,418 + +1.1
2,532,419 - -1.6
2,532,597 + -0.2
2,532,709 + ECD_02428 0.17 +1.7
2,532,709 + ECD_02428 0.17 -1.9
2,532,771 - ECD_02428 0.23 -0.7
2,532,860 - ECD_02428 0.31 -0.3
2,532,860 - ECD_02428 0.31 -0.9
2,532,860 - ECD_02428 0.31 +0.6
2,532,930 + ECD_02428 0.37 +0.3
2,533,196 - ECD_02428 0.60 -0.2
2,533,196 - ECD_02428 0.60 -1.6
2,533,343 - ECD_02428 0.73 +1.3
2,533,373 + ECD_02428 0.76 +0.8
2,533,374 - ECD_02428 0.76 -0.2

Or see this region's nucleotide sequence