Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02408 and ECD_02409 are separated by 284 nucleotides ECD_02409 and ECD_02410 are separated by 149 nucleotides ECD_02410 and ECD_02411 are separated by 148 nucleotides
ECD_02408: ECD_02408 - MreB assembly cytoskeletal protein, at 2,506,311 to 2,507,324
_02408
ECD_02409: ECD_02409 - dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent, at 2,507,609 to 2,508,763
_02409
ECD_02410: ECD_02410 - multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase, at 2,508,913 to 2,509,344
_02410
ECD_02411: ECD_02411 - penicillin-insensitive murein repair transglycosylase; inactive transpeptidase domain protein, at 2,509,493 to 2,511,805
_02411
Position (kb)
2507
2508
2509 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2506.738 kb on - strand, within ECD_02408 at 2506.811 kb on + strand, within ECD_02408 at 2506.811 kb on + strand, within ECD_02408 at 2506.812 kb on - strand, within ECD_02408 at 2506.812 kb on - strand, within ECD_02408 at 2506.823 kb on + strand, within ECD_02408 at 2506.824 kb on - strand, within ECD_02408 at 2506.828 kb on - strand, within ECD_02408 at 2506.854 kb on - strand, within ECD_02408 at 2506.857 kb on - strand, within ECD_02408 at 2506.889 kb on + strand, within ECD_02408 at 2506.889 kb on + strand, within ECD_02408 at 2507.418 kb on - strand at 2507.418 kb on - strand at 2507.422 kb on + strand at 2507.423 kb on - strand at 2507.423 kb on - strand at 2507.423 kb on - strand at 2507.424 kb on + strand at 2507.424 kb on + strand at 2507.425 kb on - strand at 2507.425 kb on - strand at 2507.425 kb on - strand at 2507.425 kb on - strand at 2507.425 kb on - strand at 2507.425 kb on - strand at 2507.470 kb on - strand at 2507.475 kb on - strand at 2507.488 kb on + strand at 2507.488 kb on + strand at 2507.489 kb on - strand at 2507.492 kb on + strand at 2507.493 kb on - strand at 2507.524 kb on - strand at 2507.526 kb on + strand at 2507.527 kb on - strand at 2507.548 kb on + strand at 2507.551 kb on + strand at 2507.551 kb on + strand at 2507.552 kb on - strand at 2507.581 kb on - strand at 2507.608 kb on - strand at 2507.651 kb on - strand at 2507.740 kb on + strand, within ECD_02409 at 2507.740 kb on + strand, within ECD_02409 at 2507.741 kb on - strand, within ECD_02409 at 2507.755 kb on - strand, within ECD_02409 at 2507.851 kb on + strand, within ECD_02409 at 2507.851 kb on + strand, within ECD_02409 at 2507.860 kb on + strand, within ECD_02409 at 2507.929 kb on - strand, within ECD_02409 at 2507.929 kb on - strand, within ECD_02409 at 2507.929 kb on - strand, within ECD_02409 at 2508.010 kb on - strand, within ECD_02409 at 2508.010 kb on - strand, within ECD_02409 at 2508.092 kb on - strand, within ECD_02409 at 2508.120 kb on - strand, within ECD_02409 at 2508.152 kb on - strand, within ECD_02409 at 2508.246 kb on - strand, within ECD_02409 at 2508.377 kb on - strand, within ECD_02409 at 2508.441 kb on + strand, within ECD_02409 at 2508.442 kb on - strand, within ECD_02409 at 2508.442 kb on - strand, within ECD_02409 at 2508.442 kb on - strand, within ECD_02409 at 2508.442 kb on - strand, within ECD_02409 at 2508.442 kb on - strand, within ECD_02409 at 2508.442 kb on - strand, within ECD_02409 at 2508.442 kb on - strand, within ECD_02409 at 2508.485 kb on - strand, within ECD_02409 at 2508.610 kb on - strand, within ECD_02409 at 2508.615 kb on + strand, within ECD_02409 at 2508.616 kb on - strand, within ECD_02409 at 2508.616 kb on - strand, within ECD_02409 at 2508.616 kb on - strand, within ECD_02409 at 2508.616 kb on - strand, within ECD_02409 at 2508.616 kb on - strand, within ECD_02409 at 2508.616 kb on - strand, within ECD_02409 at 2508.749 kb on + strand at 2508.750 kb on - strand at 2508.763 kb on + strand at 2508.764 kb on - strand at 2508.764 kb on - strand at 2508.764 kb on - strand at 2508.764 kb on - strand at 2508.764 kb on - strand at 2508.768 kb on + strand at 2508.768 kb on + strand at 2508.769 kb on - strand at 2508.769 kb on - strand at 2508.786 kb on - strand at 2508.862 kb on - strand at 2509.281 kb on + strand, within ECD_02410 at 2509.357 kb on - strand at 2509.357 kb on - strand at 2509.403 kb on + strand at 2509.554 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 2,506,738 - ECD_02408 0.42 -2.8 2,506,811 + ECD_02408 0.49 -0.9 2,506,811 + ECD_02408 0.49 -0.5 2,506,812 - ECD_02408 0.49 -1.4 2,506,812 - ECD_02408 0.49 -0.6 2,506,823 + ECD_02408 0.50 +1.3 2,506,824 - ECD_02408 0.51 -1.4 2,506,828 - ECD_02408 0.51 -0.4 2,506,854 - ECD_02408 0.54 +0.0 2,506,857 - ECD_02408 0.54 -0.7 2,506,889 + ECD_02408 0.57 -0.5 2,506,889 + ECD_02408 0.57 -2.4 2,507,418 - -0.4 2,507,418 - -0.5 2,507,422 + +1.3 2,507,423 - -0.6 2,507,423 - -0.4 2,507,423 - -2.1 2,507,424 + +0.7 2,507,424 + +1.8 2,507,425 - -1.5 2,507,425 - -0.3 2,507,425 - -1.0 2,507,425 - -1.4 2,507,425 - +0.4 2,507,425 - +1.3 2,507,470 - +0.7 2,507,475 - +1.3 2,507,488 + -0.4 2,507,488 + -0.4 2,507,489 - +0.4 2,507,492 + +0.1 2,507,493 - +1.9 2,507,524 - -1.3 2,507,526 + -0.3 2,507,527 - +0.5 2,507,548 + -0.1 2,507,551 + +0.9 2,507,551 + +0.9 2,507,552 - -1.1 2,507,581 - +0.9 2,507,608 - +0.7 2,507,651 - +1.4 2,507,740 + ECD_02409 0.11 -0.5 2,507,740 + ECD_02409 0.11 +0.7 2,507,741 - ECD_02409 0.11 +0.1 2,507,755 - ECD_02409 0.13 +0.4 2,507,851 + ECD_02409 0.21 -0.2 2,507,851 + ECD_02409 0.21 -0.5 2,507,860 + ECD_02409 0.22 +0.0 2,507,929 - ECD_02409 0.28 +1.5 2,507,929 - ECD_02409 0.28 -0.1 2,507,929 - ECD_02409 0.28 -0.9 2,508,010 - ECD_02409 0.35 +1.4 2,508,010 - ECD_02409 0.35 -1.1 2,508,092 - ECD_02409 0.42 +0.7 2,508,120 - ECD_02409 0.44 -0.8 2,508,152 - ECD_02409 0.47 -0.5 2,508,246 - ECD_02409 0.55 -1.1 2,508,377 - ECD_02409 0.66 -1.0 2,508,441 + ECD_02409 0.72 +0.7 2,508,442 - ECD_02409 0.72 -0.7 2,508,442 - ECD_02409 0.72 -0.4 2,508,442 - ECD_02409 0.72 -0.0 2,508,442 - ECD_02409 0.72 -0.1 2,508,442 - ECD_02409 0.72 -0.0 2,508,442 - ECD_02409 0.72 -0.4 2,508,442 - ECD_02409 0.72 -1.9 2,508,485 - ECD_02409 0.76 +1.4 2,508,610 - ECD_02409 0.87 -1.3 2,508,615 + ECD_02409 0.87 +0.5 2,508,616 - ECD_02409 0.87 -0.6 2,508,616 - ECD_02409 0.87 +0.4 2,508,616 - ECD_02409 0.87 +0.2 2,508,616 - ECD_02409 0.87 -1.2 2,508,616 - ECD_02409 0.87 -1.8 2,508,616 - ECD_02409 0.87 -0.4 2,508,749 + -0.4 2,508,750 - -0.5 2,508,763 + -0.9 2,508,764 - +0.4 2,508,764 - +0.3 2,508,764 - -1.2 2,508,764 - -0.2 2,508,764 - +0.9 2,508,768 + -0.9 2,508,768 + -0.3 2,508,769 - -1.3 2,508,769 - +1.4 2,508,786 - +0.5 2,508,862 - +1.0 2,509,281 + ECD_02410 0.85 +0.9 2,509,357 - +0.8 2,509,357 - +0.9 2,509,403 + +0.2 2,509,554 + -0.2
Or see this region's nucleotide sequence