Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02391 and ECD_02392 overlap by 1 nucleotides ECD_02392 and ECD_02393 are separated by 170 nucleotides ECD_02393 and ECD_02394 are separated by 4 nucleotides
ECD_02391: ECD_02391 - phosphoribosylaminoimidazole synthetase, at 2,485,678 to 2,486,715
_02391
ECD_02392: ECD_02392 - phosphoribosylglycinamide formyltransferase 1, at 2,486,715 to 2,487,353
_02392
ECD_02393: ECD_02393 - polyphosphate kinase, component of RNA degradosome, at 2,487,524 to 2,489,590
_02393
ECD_02394: ECD_02394 - exopolyphosphatase, at 2,489,595 to 2,491,136
_02394
Position (kb)
2487
2488
2489
2490 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2486.593 kb on - strand, within ECD_02391 at 2486.720 kb on + strand at 2486.765 kb on + strand at 2486.822 kb on + strand, within ECD_02392 at 2486.913 kb on + strand, within ECD_02392 at 2486.946 kb on + strand, within ECD_02392 at 2486.946 kb on + strand, within ECD_02392 at 2486.947 kb on - strand, within ECD_02392 at 2486.979 kb on - strand, within ECD_02392 at 2487.239 kb on + strand, within ECD_02392 at 2487.244 kb on - strand, within ECD_02392 at 2487.244 kb on - strand, within ECD_02392 at 2487.336 kb on + strand at 2487.351 kb on + strand at 2487.503 kb on + strand at 2487.542 kb on + strand at 2487.648 kb on - strand at 2487.983 kb on + strand, within ECD_02393 at 2487.983 kb on + strand, within ECD_02393 at 2487.990 kb on - strand, within ECD_02393 at 2488.227 kb on + strand, within ECD_02393 at 2488.554 kb on - strand, within ECD_02393 at 2489.066 kb on + strand, within ECD_02393 at 2489.171 kb on + strand, within ECD_02393 at 2489.451 kb on + strand at 2489.480 kb on + strand at 2489.481 kb on - strand at 2489.603 kb on - strand at 2489.609 kb on + strand at 2489.674 kb on + strand at 2489.757 kb on - strand, within ECD_02394 at 2489.757 kb on - strand, within ECD_02394 at 2489.852 kb on - strand, within ECD_02394 at 2490.448 kb on + strand, within ECD_02394
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 2,486,593 - ECD_02391 0.88 +0.9 2,486,720 + +0.7 2,486,765 + -0.2 2,486,822 + ECD_02392 0.17 +0.1 2,486,913 + ECD_02392 0.31 -0.3 2,486,946 + ECD_02392 0.36 +0.7 2,486,946 + ECD_02392 0.36 -0.6 2,486,947 - ECD_02392 0.36 -1.8 2,486,979 - ECD_02392 0.41 -0.5 2,487,239 + ECD_02392 0.82 -0.3 2,487,244 - ECD_02392 0.83 -0.7 2,487,244 - ECD_02392 0.83 -0.6 2,487,336 + -0.4 2,487,351 + +0.1 2,487,503 + -1.8 2,487,542 + +0.8 2,487,648 - -0.3 2,487,983 + ECD_02393 0.22 -0.5 2,487,983 + ECD_02393 0.22 -0.2 2,487,990 - ECD_02393 0.23 -0.9 2,488,227 + ECD_02393 0.34 -0.6 2,488,554 - ECD_02393 0.50 -1.9 2,489,066 + ECD_02393 0.75 -0.9 2,489,171 + ECD_02393 0.80 -1.1 2,489,451 + +1.0 2,489,480 + -0.2 2,489,481 - +1.4 2,489,603 - -1.9 2,489,609 + +0.8 2,489,674 + +0.2 2,489,757 - ECD_02394 0.11 +2.0 2,489,757 - ECD_02394 0.11 +0.2 2,489,852 - ECD_02394 0.17 +1.7 2,490,448 + ECD_02394 0.55 +0.1
Or see this region's nucleotide sequence