Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02386 and ECD_02387 are separated by 20 nucleotides ECD_02387 and ECD_02388 are separated by 137 nucleotides ECD_02388 and ECD_02389 are separated by 49 nucleotides
ECD_02386: ECD_02386 - OM protein maintenance and assembly metalloprotease and chaperone, periplasmic, at 2,480,575 to 2,482,038
_02386
ECD_02387: ECD_02387 - putative oxidoreductase, at 2,482,059 to 2,482,418
_02387
ECD_02388: ECD_02388 - ATPase regulatory factor involved in DnaA inactivation, at 2,482,556 to 2,483,302
_02388
ECD_02389: ECD_02389 - uracil permease, at 2,483,352 to 2,484,641
_02389
Position (kb)
2482
2483 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2481.427 kb on + strand, within ECD_02386 at 2481.927 kb on + strand at 2482.017 kb on + strand at 2482.036 kb on + strand at 2482.037 kb on - strand at 2482.156 kb on + strand, within ECD_02387 at 2482.223 kb on + strand, within ECD_02387 at 2482.260 kb on + strand, within ECD_02387 at 2482.263 kb on - strand, within ECD_02387 at 2482.489 kb on + strand at 2482.490 kb on - strand at 2482.493 kb on - strand at 2482.499 kb on + strand at 2482.554 kb on - strand at 2483.353 kb on + strand at 2483.364 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 2,481,427 + ECD_02386 0.58 +0.5 2,481,927 + +3.6 2,482,017 + +0.4 2,482,036 + -0.1 2,482,037 - +1.0 2,482,156 + ECD_02387 0.27 -1.9 2,482,223 + ECD_02387 0.46 -1.4 2,482,260 + ECD_02387 0.56 -1.4 2,482,263 - ECD_02387 0.57 -1.3 2,482,489 + -0.0 2,482,490 - -0.2 2,482,493 - -1.2 2,482,499 + +0.4 2,482,554 - +1.0 2,483,353 + -0.1 2,483,364 + -0.8
Or see this region's nucleotide sequence