Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02371 and ECD_02372 overlap by 1 nucleotides ECD_02372 and ECD_02373 are separated by 252 nucleotides ECD_02373 and ECD_02374 overlap by 1 nucleotides
ECD_02371: ECD_02371 - transcriptional repressor, regulatory protein accessory to GcvA, at 2,464,395 to 2,464,967
_02371
ECD_02372: ECD_02372 - peroxiredoxin; thiol peroxidase, thioredoxin-dependent, at 2,464,967 to 2,465,437
_02372
ECD_02373: ECD_02373 - hydrogenase 4, 4Fe-4S subunit, at 2,465,690 to 2,466,307
_02373
ECD_02374: ECD_02374 - hydrogenase 4, membrane subunit, at 2,466,307 to 2,468,325
_02374
Position (kb)
2465
2466
2467 Strain fitness (log2 ratio)
-2
-1
0
1 at 2464.717 kb on + strand, within ECD_02371 at 2464.717 kb on + strand, within ECD_02371 at 2464.754 kb on + strand, within ECD_02371 at 2464.754 kb on + strand, within ECD_02371 at 2464.755 kb on - strand, within ECD_02371 at 2464.866 kb on - strand, within ECD_02371 at 2464.888 kb on + strand, within ECD_02371 at 2464.888 kb on + strand, within ECD_02371 at 2464.889 kb on - strand, within ECD_02371 at 2464.893 kb on - strand, within ECD_02371 at 2464.893 kb on - strand, within ECD_02371 at 2464.916 kb on + strand at 2464.961 kb on + strand at 2464.962 kb on - strand at 2464.962 kb on - strand at 2464.965 kb on + strand at 2465.439 kb on + strand at 2465.440 kb on - strand at 2465.480 kb on + strand at 2465.481 kb on - strand at 2465.481 kb on - strand at 2465.481 kb on - strand at 2465.725 kb on + strand at 2465.734 kb on + strand at 2465.734 kb on + strand at 2465.734 kb on + strand at 2465.734 kb on + strand at 2465.735 kb on - strand at 2465.735 kb on - strand at 2465.735 kb on - strand at 2465.735 kb on - strand at 2465.738 kb on - strand at 2465.767 kb on + strand, within ECD_02373 at 2465.768 kb on - strand, within ECD_02373 at 2466.358 kb on - strand at 2466.400 kb on - strand at 2466.400 kb on - strand at 2466.468 kb on - strand at 2466.468 kb on - strand at 2466.610 kb on + strand, within ECD_02374 at 2467.052 kb on + strand, within ECD_02374 at 2467.053 kb on - strand, within ECD_02374 at 2467.064 kb on + strand, within ECD_02374 at 2467.068 kb on + strand, within ECD_02374 at 2467.181 kb on + strand, within ECD_02374 at 2467.181 kb on + strand, within ECD_02374 at 2467.181 kb on + strand, within ECD_02374 at 2467.181 kb on + strand, within ECD_02374 at 2467.181 kb on + strand, within ECD_02374 at 2467.181 kb on + strand, within ECD_02374 at 2467.182 kb on - strand, within ECD_02374 at 2467.182 kb on - strand, within ECD_02374
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 2,464,717 + ECD_02371 0.56 +0.2 2,464,717 + ECD_02371 0.56 +0.1 2,464,754 + ECD_02371 0.63 -1.1 2,464,754 + ECD_02371 0.63 +0.4 2,464,755 - ECD_02371 0.63 -1.7 2,464,866 - ECD_02371 0.82 +1.1 2,464,888 + ECD_02371 0.86 -1.6 2,464,888 + ECD_02371 0.86 -0.4 2,464,889 - ECD_02371 0.86 -1.1 2,464,893 - ECD_02371 0.87 -0.1 2,464,893 - ECD_02371 0.87 -0.8 2,464,916 + +1.6 2,464,961 + -0.2 2,464,962 - +0.8 2,464,962 - -0.3 2,464,965 + -1.1 2,465,439 + -0.2 2,465,440 - +0.1 2,465,480 + -0.7 2,465,481 - -0.1 2,465,481 - -0.3 2,465,481 - -0.1 2,465,725 + -0.9 2,465,734 + -1.4 2,465,734 + +1.3 2,465,734 + +1.4 2,465,734 + +0.3 2,465,735 - +0.4 2,465,735 - -1.1 2,465,735 - -0.4 2,465,735 - +0.6 2,465,738 - +0.8 2,465,767 + ECD_02373 0.12 -1.4 2,465,768 - ECD_02373 0.13 -0.4 2,466,358 - +1.1 2,466,400 - -2.2 2,466,400 - -0.8 2,466,468 - -1.4 2,466,468 - -0.2 2,466,610 + ECD_02374 0.15 -1.1 2,467,052 + ECD_02374 0.37 +0.6 2,467,053 - ECD_02374 0.37 -2.3 2,467,064 + ECD_02374 0.37 -2.3 2,467,068 + ECD_02374 0.38 -0.5 2,467,181 + ECD_02374 0.43 +0.8 2,467,181 + ECD_02374 0.43 -0.4 2,467,181 + ECD_02374 0.43 -0.5 2,467,181 + ECD_02374 0.43 -1.1 2,467,181 + ECD_02374 0.43 +1.2 2,467,181 + ECD_02374 0.43 -0.7 2,467,182 - ECD_02374 0.43 -0.4 2,467,182 - ECD_02374 0.43 +0.1
Or see this region's nucleotide sequence