Strain Fitness in Escherichia coli BL21 around ECD_02349

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02346 and ECD_02347 are separated by 11 nucleotidesECD_02347 and ECD_02348 are separated by 106 nucleotidesECD_02348 and ECD_02349 are separated by 38 nucleotidesECD_02349 and ECD_02350 overlap by 11 nucleotidesECD_02350 and ECD_02351 overlap by 4 nucleotides ECD_02346: ECD_02346 - aldehyde oxidoreductase, ethanolamine utilization protein, at 2,434,838 to 2,436,241 _02346 ECD_02347: ECD_02347 - Ethanolamine catabolic microcompartment shell protein, at 2,436,253 to 2,436,540 _02347 ECD_02348: ECD_02348 - ethanolamine utilization protein, putative carboxysome structural protein, at 2,436,647 to 2,436,940 _02348 ECD_02349: ECD_02349 - phosphate acetyltransferase, at 2,436,979 to 2,437,995 _02349 ECD_02350: ECD_02350 - cobalamin adenosyltransferase involved in ethanolamine utilization, at 2,437,985 to 2,438,794 _02350 ECD_02351: ECD_02351 - RmlC-like cupin domain protein, at 2,438,791 to 2,439,492 _02351 Position (kb) 2436 2437 2438Strain fitness (log2 ratio) -2 -1 0 1at 2436.558 kb on - strandat 2436.649 kb on - strandat 2436.731 kb on + strand, within ECD_02348at 2436.732 kb on - strand, within ECD_02348at 2436.818 kb on - strand, within ECD_02348at 2437.117 kb on + strand, within ECD_02349at 2437.118 kb on - strand, within ECD_02349at 2437.118 kb on - strand, within ECD_02349at 2437.527 kb on - strand, within ECD_02349at 2437.592 kb on - strand, within ECD_02349at 2438.070 kb on + strand, within ECD_02350at 2438.071 kb on - strand, within ECD_02350at 2438.071 kb on - strand, within ECD_02350at 2438.071 kb on - strand, within ECD_02350at 2438.350 kb on + strand, within ECD_02350at 2438.752 kb on + strandat 2438.766 kb on - strandat 2438.826 kb on - strandat 2438.826 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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2,436,558 - -0.9
2,436,649 - -0.3
2,436,731 + ECD_02348 0.29 -0.9
2,436,732 - ECD_02348 0.29 +1.2
2,436,818 - ECD_02348 0.58 -0.7
2,437,117 + ECD_02349 0.14 +0.4
2,437,118 - ECD_02349 0.14 -1.5
2,437,118 - ECD_02349 0.14 +0.3
2,437,527 - ECD_02349 0.54 -0.8
2,437,592 - ECD_02349 0.60 -1.2
2,438,070 + ECD_02350 0.10 -0.7
2,438,071 - ECD_02350 0.11 -0.0
2,438,071 - ECD_02350 0.11 +0.3
2,438,071 - ECD_02350 0.11 -1.0
2,438,350 + ECD_02350 0.45 -0.8
2,438,752 + -2.1
2,438,766 - +0.8
2,438,826 - -0.4
2,438,826 - +1.0

Or see this region's nucleotide sequence