Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02346 and ECD_02347 are separated by 11 nucleotides ECD_02347 and ECD_02348 are separated by 106 nucleotides ECD_02348 and ECD_02349 are separated by 38 nucleotides ECD_02349 and ECD_02350 overlap by 11 nucleotides ECD_02350 and ECD_02351 overlap by 4 nucleotides
ECD_02346: ECD_02346 - aldehyde oxidoreductase, ethanolamine utilization protein, at 2,434,838 to 2,436,241
_02346
ECD_02347: ECD_02347 - Ethanolamine catabolic microcompartment shell protein, at 2,436,253 to 2,436,540
_02347
ECD_02348: ECD_02348 - ethanolamine utilization protein, putative carboxysome structural protein, at 2,436,647 to 2,436,940
_02348
ECD_02349: ECD_02349 - phosphate acetyltransferase, at 2,436,979 to 2,437,995
_02349
ECD_02350: ECD_02350 - cobalamin adenosyltransferase involved in ethanolamine utilization, at 2,437,985 to 2,438,794
_02350
ECD_02351: ECD_02351 - RmlC-like cupin domain protein, at 2,438,791 to 2,439,492
_02351
Position (kb)
2436
2437
2438 Strain fitness (log2 ratio)
-2
-1
0
1 at 2436.558 kb on - strand at 2436.649 kb on - strand at 2436.731 kb on + strand, within ECD_02348 at 2436.732 kb on - strand, within ECD_02348 at 2436.818 kb on - strand, within ECD_02348 at 2437.117 kb on + strand, within ECD_02349 at 2437.118 kb on - strand, within ECD_02349 at 2437.118 kb on - strand, within ECD_02349 at 2437.527 kb on - strand, within ECD_02349 at 2437.592 kb on - strand, within ECD_02349 at 2438.070 kb on + strand, within ECD_02350 at 2438.071 kb on - strand, within ECD_02350 at 2438.071 kb on - strand, within ECD_02350 at 2438.071 kb on - strand, within ECD_02350 at 2438.350 kb on + strand, within ECD_02350 at 2438.752 kb on + strand at 2438.766 kb on - strand at 2438.826 kb on - strand at 2438.826 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 2,436,558 - -0.9 2,436,649 - -0.3 2,436,731 + ECD_02348 0.29 -0.9 2,436,732 - ECD_02348 0.29 +1.2 2,436,818 - ECD_02348 0.58 -0.7 2,437,117 + ECD_02349 0.14 +0.4 2,437,118 - ECD_02349 0.14 -1.5 2,437,118 - ECD_02349 0.14 +0.3 2,437,527 - ECD_02349 0.54 -0.8 2,437,592 - ECD_02349 0.60 -1.2 2,438,070 + ECD_02350 0.10 -0.7 2,438,071 - ECD_02350 0.11 -0.0 2,438,071 - ECD_02350 0.11 +0.3 2,438,071 - ECD_02350 0.11 -1.0 2,438,350 + ECD_02350 0.45 -0.8 2,438,752 + -2.1 2,438,766 - +0.8 2,438,826 - -0.4 2,438,826 - +1.0
Or see this region's nucleotide sequence