Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02344 and ECD_02345 overlap by 11 nucleotides ECD_02345 and ECD_02346 are separated by 10 nucleotides ECD_02346 and ECD_02347 are separated by 11 nucleotides ECD_02347 and ECD_02348 are separated by 106 nucleotides ECD_02348 and ECD_02349 are separated by 38 nucleotides
ECD_02344: ECD_02344 - ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase, at 2,432,814 to 2,434,001
_02344
ECD_02345: ECD_02345 - ethanolamine utilization protein, HSP70/actin superfamily protein, at 2,433,991 to 2,434,827
_02345
ECD_02346: ECD_02346 - aldehyde oxidoreductase, ethanolamine utilization protein, at 2,434,838 to 2,436,241
_02346
ECD_02347: ECD_02347 - Ethanolamine catabolic microcompartment shell protein, at 2,436,253 to 2,436,540
_02347
ECD_02348: ECD_02348 - ethanolamine utilization protein, putative carboxysome structural protein, at 2,436,647 to 2,436,940
_02348
ECD_02349: ECD_02349 - phosphate acetyltransferase, at 2,436,979 to 2,437,995
_02349
Position (kb)
2434
2435
2436
2437 Strain fitness (log2 ratio)
-2
-1
0
1 at 2434.003 kb on + strand at 2434.003 kb on + strand at 2434.004 kb on - strand at 2434.004 kb on - strand at 2434.054 kb on - strand at 2434.073 kb on - strand at 2434.259 kb on + strand, within ECD_02345 at 2434.507 kb on - strand, within ECD_02345 at 2434.865 kb on + strand at 2435.421 kb on - strand, within ECD_02346 at 2435.567 kb on - strand, within ECD_02346 at 2435.582 kb on + strand, within ECD_02346 at 2435.812 kb on + strand, within ECD_02346 at 2435.883 kb on - strand, within ECD_02346 at 2436.558 kb on - strand at 2436.649 kb on - strand at 2436.731 kb on + strand, within ECD_02348 at 2436.732 kb on - strand, within ECD_02348 at 2436.818 kb on - strand, within ECD_02348 at 2437.117 kb on + strand, within ECD_02349 at 2437.118 kb on - strand, within ECD_02349 at 2437.118 kb on - strand, within ECD_02349
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 2,434,003 + +0.9 2,434,003 + +1.1 2,434,004 - -2.1 2,434,004 - -0.1 2,434,054 - +1.1 2,434,073 - +1.1 2,434,259 + ECD_02345 0.32 -0.1 2,434,507 - ECD_02345 0.62 -0.2 2,434,865 + -1.2 2,435,421 - ECD_02346 0.42 -0.6 2,435,567 - ECD_02346 0.52 +0.5 2,435,582 + ECD_02346 0.53 -0.7 2,435,812 + ECD_02346 0.69 -0.6 2,435,883 - ECD_02346 0.74 -1.0 2,436,558 - -0.9 2,436,649 - -0.3 2,436,731 + ECD_02348 0.29 -0.9 2,436,732 - ECD_02348 0.29 +1.2 2,436,818 - ECD_02348 0.58 -0.7 2,437,117 + ECD_02349 0.14 +0.4 2,437,118 - ECD_02349 0.14 -1.5 2,437,118 - ECD_02349 0.14 +0.3
Or see this region's nucleotide sequence