Strain Fitness in Escherichia coli BL21 around ECD_02346

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02344 and ECD_02345 overlap by 11 nucleotidesECD_02345 and ECD_02346 are separated by 10 nucleotidesECD_02346 and ECD_02347 are separated by 11 nucleotidesECD_02347 and ECD_02348 are separated by 106 nucleotidesECD_02348 and ECD_02349 are separated by 38 nucleotides ECD_02344: ECD_02344 - ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase, at 2,432,814 to 2,434,001 _02344 ECD_02345: ECD_02345 - ethanolamine utilization protein, HSP70/actin superfamily protein, at 2,433,991 to 2,434,827 _02345 ECD_02346: ECD_02346 - aldehyde oxidoreductase, ethanolamine utilization protein, at 2,434,838 to 2,436,241 _02346 ECD_02347: ECD_02347 - Ethanolamine catabolic microcompartment shell protein, at 2,436,253 to 2,436,540 _02347 ECD_02348: ECD_02348 - ethanolamine utilization protein, putative carboxysome structural protein, at 2,436,647 to 2,436,940 _02348 ECD_02349: ECD_02349 - phosphate acetyltransferase, at 2,436,979 to 2,437,995 _02349 Position (kb) 2434 2435 2436 2437Strain fitness (log2 ratio) -2 -1 0 1at 2434.003 kb on + strandat 2434.003 kb on + strandat 2434.004 kb on - strandat 2434.004 kb on - strandat 2434.054 kb on - strandat 2434.073 kb on - strandat 2434.259 kb on + strand, within ECD_02345at 2434.507 kb on - strand, within ECD_02345at 2434.865 kb on + strandat 2435.421 kb on - strand, within ECD_02346at 2435.567 kb on - strand, within ECD_02346at 2435.582 kb on + strand, within ECD_02346at 2435.812 kb on + strand, within ECD_02346at 2435.883 kb on - strand, within ECD_02346at 2436.558 kb on - strandat 2436.649 kb on - strandat 2436.731 kb on + strand, within ECD_02348at 2436.732 kb on - strand, within ECD_02348at 2436.818 kb on - strand, within ECD_02348at 2437.117 kb on + strand, within ECD_02349at 2437.118 kb on - strand, within ECD_02349at 2437.118 kb on - strand, within ECD_02349

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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2,434,003 + +0.9
2,434,003 + +1.1
2,434,004 - -2.1
2,434,004 - -0.1
2,434,054 - +1.1
2,434,073 - +1.1
2,434,259 + ECD_02345 0.32 -0.1
2,434,507 - ECD_02345 0.62 -0.2
2,434,865 + -1.2
2,435,421 - ECD_02346 0.42 -0.6
2,435,567 - ECD_02346 0.52 +0.5
2,435,582 + ECD_02346 0.53 -0.7
2,435,812 + ECD_02346 0.69 -0.6
2,435,883 - ECD_02346 0.74 -1.0
2,436,558 - -0.9
2,436,649 - -0.3
2,436,731 + ECD_02348 0.29 -0.9
2,436,732 - ECD_02348 0.29 +1.2
2,436,818 - ECD_02348 0.58 -0.7
2,437,117 + ECD_02349 0.14 +0.4
2,437,118 - ECD_02349 0.14 -1.5
2,437,118 - ECD_02349 0.14 +0.3

Or see this region's nucleotide sequence