Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02279 and ECD_02280 are separated by 4 nucleotides ECD_02280 and ECD_02281 are separated by 55 nucleotides
ECD_02279: ECD_02279 - response regulator in two-component regulatory system with EvgS, at 2,361,643 to 2,362,257
_02279
ECD_02280: ECD_02280 - hybrid sensory histidine kinase in two-component regulatory system with EvgA, at 2,362,262 to 2,365,855
_02280
ECD_02281: ECD_02281 - acetyl-CoA:oxalate CoA-transferase, at 2,365,911 to 2,367,056
_02281
Position (kb)
2362
2363
2364
2365
2366 Strain fitness (log2 ratio)
-1
0
1 at 2361.601 kb on + strand at 2361.642 kb on + strand at 2361.657 kb on + strand at 2361.859 kb on - strand, within ECD_02279 at 2362.386 kb on + strand at 2362.450 kb on + strand at 2363.916 kb on + strand, within ECD_02280 at 2365.269 kb on - strand, within ECD_02280 at 2365.470 kb on + strand, within ECD_02280 at 2365.470 kb on + strand, within ECD_02280 at 2365.912 kb on + strand at 2366.095 kb on - strand, within ECD_02281 at 2366.353 kb on + strand, within ECD_02281 at 2366.401 kb on + strand, within ECD_02281 at 2366.552 kb on + strand, within ECD_02281 at 2366.630 kb on - strand, within ECD_02281 at 2366.684 kb on - strand, within ECD_02281 at 2366.745 kb on - strand, within ECD_02281
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 2,361,601 + +0.5 2,361,642 + +1.0 2,361,657 + +0.4 2,361,859 - ECD_02279 0.35 +1.5 2,362,386 + +0.9 2,362,450 + +0.2 2,363,916 + ECD_02280 0.46 -0.1 2,365,269 - ECD_02280 0.84 -0.9 2,365,470 + ECD_02280 0.89 -0.6 2,365,470 + ECD_02280 0.89 +1.6 2,365,912 + +1.1 2,366,095 - ECD_02281 0.16 +0.3 2,366,353 + ECD_02281 0.39 -0.3 2,366,401 + ECD_02281 0.43 +0.3 2,366,552 + ECD_02281 0.56 +0.1 2,366,630 - ECD_02281 0.63 -0.7 2,366,684 - ECD_02281 0.67 +0.6 2,366,745 - ECD_02281 0.73 -1.7
Or see this region's nucleotide sequence