Strain Fitness in Escherichia coli BL21 around ECD_02276

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02275 and ECD_02276 are separated by 17 nucleotidesECD_02276 and ECD_02277 are separated by 107 nucleotides ECD_02275: ECD_02275 - D-serine transporter, at 2,355,735 to 2,357,072 _02275 ECD_02276: ECD_02276 - D-serine dehydratase, at 2,357,090 to 2,358,418 _02276 ECD_02277: ECD_02277 - putative multidrug efflux system, at 2,358,526 to 2,360,064 _02277 Position (kb) 2357 2358 2359Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 2356.153 kb on + strand, within ECD_02275at 2356.178 kb on + strand, within ECD_02275at 2356.228 kb on + strand, within ECD_02275at 2356.230 kb on + strand, within ECD_02275at 2356.231 kb on - strand, within ECD_02275at 2356.231 kb on - strand, within ECD_02275at 2356.242 kb on - strand, within ECD_02275at 2356.439 kb on - strand, within ECD_02275at 2356.445 kb on - strand, within ECD_02275at 2356.510 kb on - strand, within ECD_02275at 2356.575 kb on + strand, within ECD_02275at 2356.575 kb on + strand, within ECD_02275at 2356.575 kb on + strand, within ECD_02275at 2356.586 kb on + strand, within ECD_02275at 2356.599 kb on - strand, within ECD_02275at 2356.599 kb on - strand, within ECD_02275at 2356.599 kb on - strand, within ECD_02275at 2356.626 kb on - strand, within ECD_02275at 2356.647 kb on - strand, within ECD_02275at 2356.733 kb on + strand, within ECD_02275at 2356.745 kb on + strand, within ECD_02275at 2356.787 kb on + strand, within ECD_02275at 2356.994 kb on + strandat 2356.994 kb on + strandat 2357.003 kb on + strandat 2357.004 kb on - strandat 2357.136 kb on + strandat 2357.205 kb on + strandat 2357.439 kb on + strand, within ECD_02276at 2357.525 kb on + strand, within ECD_02276at 2357.656 kb on + strand, within ECD_02276at 2357.656 kb on + strand, within ECD_02276at 2357.656 kb on + strand, within ECD_02276at 2357.761 kb on + strand, within ECD_02276at 2357.794 kb on + strand, within ECD_02276at 2358.022 kb on + strand, within ECD_02276at 2358.022 kb on + strand, within ECD_02276at 2358.023 kb on - strand, within ECD_02276at 2358.030 kb on + strand, within ECD_02276at 2358.040 kb on + strand, within ECD_02276at 2358.041 kb on - strand, within ECD_02276at 2358.048 kb on + strand, within ECD_02276at 2358.170 kb on + strand, within ECD_02276at 2358.194 kb on + strand, within ECD_02276at 2358.195 kb on - strand, within ECD_02276at 2358.229 kb on + strand, within ECD_02276at 2358.291 kb on + strandat 2358.291 kb on + strandat 2358.483 kb on + strandat 2358.483 kb on + strandat 2358.483 kb on + strandat 2358.508 kb on - strandat 2358.584 kb on - strandat 2358.773 kb on - strand, within ECD_02277

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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2,356,153 + ECD_02275 0.31 +0.3
2,356,178 + ECD_02275 0.33 -1.4
2,356,228 + ECD_02275 0.37 -1.3
2,356,230 + ECD_02275 0.37 +0.3
2,356,231 - ECD_02275 0.37 +1.1
2,356,231 - ECD_02275 0.37 +0.2
2,356,242 - ECD_02275 0.38 -0.0
2,356,439 - ECD_02275 0.53 +0.9
2,356,445 - ECD_02275 0.53 -2.2
2,356,510 - ECD_02275 0.58 +0.5
2,356,575 + ECD_02275 0.63 -0.2
2,356,575 + ECD_02275 0.63 +0.4
2,356,575 + ECD_02275 0.63 -0.9
2,356,586 + ECD_02275 0.64 +0.2
2,356,599 - ECD_02275 0.65 -0.5
2,356,599 - ECD_02275 0.65 -0.6
2,356,599 - ECD_02275 0.65 -1.3
2,356,626 - ECD_02275 0.67 -0.2
2,356,647 - ECD_02275 0.68 -0.4
2,356,733 + ECD_02275 0.75 +0.2
2,356,745 + ECD_02275 0.75 +0.3
2,356,787 + ECD_02275 0.79 +1.2
2,356,994 + -0.5
2,356,994 + -0.8
2,357,003 + -0.9
2,357,004 - +1.0
2,357,136 + +0.7
2,357,205 + -0.4
2,357,439 + ECD_02276 0.26 +0.5
2,357,525 + ECD_02276 0.33 -0.2
2,357,656 + ECD_02276 0.43 +0.1
2,357,656 + ECD_02276 0.43 +1.1
2,357,656 + ECD_02276 0.43 -1.7
2,357,761 + ECD_02276 0.50 -0.1
2,357,794 + ECD_02276 0.53 +0.5
2,358,022 + ECD_02276 0.70 -0.5
2,358,022 + ECD_02276 0.70 +0.9
2,358,023 - ECD_02276 0.70 -1.1
2,358,030 + ECD_02276 0.71 +1.9
2,358,040 + ECD_02276 0.71 +1.7
2,358,041 - ECD_02276 0.72 -1.2
2,358,048 + ECD_02276 0.72 +1.1
2,358,170 + ECD_02276 0.81 +2.7
2,358,194 + ECD_02276 0.83 +0.7
2,358,195 - ECD_02276 0.83 +3.6
2,358,229 + ECD_02276 0.86 +0.9
2,358,291 + +1.3
2,358,291 + +1.9
2,358,483 + -0.2
2,358,483 + +1.1
2,358,483 + +0.5
2,358,508 - +5.8
2,358,584 - -0.7
2,358,773 - ECD_02277 0.16 +0.9

Or see this region's nucleotide sequence