Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02254 and ECD_02255 are separated by 34 nucleotides ECD_02255 and ECD_02256 are separated by 165 nucleotides ECD_02256 and ECD_02257 are separated by 125 nucleotides
ECD_02254: ECD_02254 - chorismate synthase, at 2,333,641 to 2,334,726
_02254
ECD_02255: ECD_02255 - N5-glutamine methyltransferase, at 2,334,761 to 2,335,693
_02255
ECD_02256: ECD_02256 - putative DNA endonuclease, at 2,335,859 to 2,336,410
_02256
ECD_02257: ECD_02257 - DUF2544 family putative outer membrane protein, at 2,336,536 to 2,337,333
_02257
Position (kb)
2334
2335
2336 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2333.818 kb on - strand, within ECD_02254 at 2334.401 kb on + strand, within ECD_02254 at 2334.402 kb on - strand, within ECD_02254 at 2334.433 kb on - strand, within ECD_02254 at 2334.821 kb on - strand at 2334.887 kb on - strand, within ECD_02255 at 2334.894 kb on - strand, within ECD_02255 at 2334.894 kb on - strand, within ECD_02255 at 2335.027 kb on - strand, within ECD_02255 at 2335.049 kb on - strand, within ECD_02255 at 2335.279 kb on + strand, within ECD_02255 at 2335.419 kb on + strand, within ECD_02255 at 2335.420 kb on - strand, within ECD_02255 at 2335.557 kb on - strand, within ECD_02255 at 2335.665 kb on - strand at 2335.755 kb on - strand at 2335.789 kb on + strand at 2335.856 kb on + strand at 2335.934 kb on - strand, within ECD_02256 at 2336.078 kb on + strand, within ECD_02256 at 2336.078 kb on + strand, within ECD_02256 at 2336.078 kb on + strand, within ECD_02256 at 2336.469 kb on - strand at 2336.474 kb on + strand at 2336.593 kb on - strand at 2336.603 kb on - strand at 2336.614 kb on + strand at 2336.615 kb on - strand at 2336.671 kb on - strand, within ECD_02257
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 2,333,818 - ECD_02254 0.16 -1.4 2,334,401 + ECD_02254 0.70 +1.9 2,334,402 - ECD_02254 0.70 +1.5 2,334,433 - ECD_02254 0.73 -0.1 2,334,821 - -0.5 2,334,887 - ECD_02255 0.14 +0.5 2,334,894 - ECD_02255 0.14 +1.4 2,334,894 - ECD_02255 0.14 +0.7 2,335,027 - ECD_02255 0.29 +0.4 2,335,049 - ECD_02255 0.31 +0.9 2,335,279 + ECD_02255 0.56 +2.2 2,335,419 + ECD_02255 0.71 +0.9 2,335,420 - ECD_02255 0.71 +1.2 2,335,557 - ECD_02255 0.85 +0.1 2,335,665 - -1.5 2,335,755 - -2.3 2,335,789 + +0.9 2,335,856 + -0.6 2,335,934 - ECD_02256 0.14 -0.8 2,336,078 + ECD_02256 0.40 +0.3 2,336,078 + ECD_02256 0.40 +0.1 2,336,078 + ECD_02256 0.40 -0.9 2,336,469 - +0.2 2,336,474 + +0.4 2,336,593 - -1.7 2,336,603 - -0.6 2,336,614 + +0.5 2,336,615 - -0.7 2,336,671 - ECD_02257 0.17 -0.2
Or see this region's nucleotide sequence