Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02183 and ECD_02184 overlap by 4 nucleotides ECD_02184 and ECD_02185 overlap by 1 nucleotides ECD_02185 and ECD_02186 overlap by 7 nucleotides ECD_02186 and ECD_02187 are separated by 109 nucleotides
ECD_02183: ECD_02183 - 4-amino-4-deoxy-L-arabinose transferase, at 2,261,082 to 2,262,734
_02183
ECD_02184: ECD_02184 - undecaprenyl phosphate-alpha-L-ara4N exporter; flippase ArnEF subunit, at 2,262,731 to 2,263,066
_02184
ECD_02185: ECD_02185 - undecaprenyl phosphate-alpha-L-ara4N exporter; flippase ArnEF subunit, at 2,263,066 to 2,263,452
_02185
ECD_02186: ECD_02186 - inactive two-component system connector protein, at 2,263,446 to 2,263,712
_02186
ECD_02187: ECD_02187 - O-succinylbenzoate-CoA ligase, at 2,263,822 to 2,265,177
_02187
Position (kb)
2263
2264 Strain fitness (log2 ratio)
-1
0
1
2 at 2262.504 kb on + strand, within ECD_02183 at 2262.536 kb on + strand, within ECD_02183 at 2262.536 kb on + strand, within ECD_02183 at 2262.593 kb on + strand at 2262.593 kb on + strand at 2262.593 kb on + strand at 2262.653 kb on + strand at 2262.653 kb on + strand at 2263.499 kb on - strand, within ECD_02186 at 2263.548 kb on - strand, within ECD_02186 at 2263.656 kb on - strand, within ECD_02186 at 2263.660 kb on - strand, within ECD_02186 at 2263.660 kb on - strand, within ECD_02186 at 2263.660 kb on - strand, within ECD_02186 at 2263.660 kb on - strand, within ECD_02186 at 2263.660 kb on - strand, within ECD_02186 at 2263.660 kb on - strand, within ECD_02186 at 2263.660 kb on - strand, within ECD_02186 at 2263.719 kb on - strand at 2263.758 kb on - strand at 2263.764 kb on + strand at 2263.979 kb on + strand, within ECD_02187 at 2263.980 kb on - strand, within ECD_02187 at 2264.117 kb on - strand, within ECD_02187 at 2264.524 kb on - strand, within ECD_02187 at 2264.586 kb on - strand, within ECD_02187 at 2264.711 kb on + strand, within ECD_02187
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 2,262,504 + ECD_02183 0.86 -0.3 2,262,536 + ECD_02183 0.88 +0.9 2,262,536 + ECD_02183 0.88 +1.2 2,262,593 + -0.2 2,262,593 + +2.0 2,262,593 + +1.6 2,262,653 + -1.6 2,262,653 + +2.3 2,263,499 - ECD_02186 0.20 +1.0 2,263,548 - ECD_02186 0.38 -0.4 2,263,656 - ECD_02186 0.79 -1.0 2,263,660 - ECD_02186 0.80 -0.1 2,263,660 - ECD_02186 0.80 +1.4 2,263,660 - ECD_02186 0.80 -0.7 2,263,660 - ECD_02186 0.80 +0.0 2,263,660 - ECD_02186 0.80 -1.7 2,263,660 - ECD_02186 0.80 -1.3 2,263,660 - ECD_02186 0.80 -0.7 2,263,719 - -0.0 2,263,758 - +0.7 2,263,764 + +0.9 2,263,979 + ECD_02187 0.12 -1.1 2,263,980 - ECD_02187 0.12 -0.9 2,264,117 - ECD_02187 0.22 -0.0 2,264,524 - ECD_02187 0.52 -0.6 2,264,586 - ECD_02187 0.56 -0.9 2,264,711 + ECD_02187 0.66 +0.8
Or see this region's nucleotide sequence