Strain Fitness in Escherichia coli BL21 around ECD_02186

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02183 and ECD_02184 overlap by 4 nucleotidesECD_02184 and ECD_02185 overlap by 1 nucleotidesECD_02185 and ECD_02186 overlap by 7 nucleotidesECD_02186 and ECD_02187 are separated by 109 nucleotides ECD_02183: ECD_02183 - 4-amino-4-deoxy-L-arabinose transferase, at 2,261,082 to 2,262,734 _02183 ECD_02184: ECD_02184 - undecaprenyl phosphate-alpha-L-ara4N exporter; flippase ArnEF subunit, at 2,262,731 to 2,263,066 _02184 ECD_02185: ECD_02185 - undecaprenyl phosphate-alpha-L-ara4N exporter; flippase ArnEF subunit, at 2,263,066 to 2,263,452 _02185 ECD_02186: ECD_02186 - inactive two-component system connector protein, at 2,263,446 to 2,263,712 _02186 ECD_02187: ECD_02187 - O-succinylbenzoate-CoA ligase, at 2,263,822 to 2,265,177 _02187 Position (kb) 2263 2264Strain fitness (log2 ratio) -1 0 1 2at 2262.504 kb on + strand, within ECD_02183at 2262.536 kb on + strand, within ECD_02183at 2262.536 kb on + strand, within ECD_02183at 2262.593 kb on + strandat 2262.593 kb on + strandat 2262.593 kb on + strandat 2262.653 kb on + strandat 2262.653 kb on + strandat 2263.499 kb on - strand, within ECD_02186at 2263.548 kb on - strand, within ECD_02186at 2263.656 kb on - strand, within ECD_02186at 2263.660 kb on - strand, within ECD_02186at 2263.660 kb on - strand, within ECD_02186at 2263.660 kb on - strand, within ECD_02186at 2263.660 kb on - strand, within ECD_02186at 2263.660 kb on - strand, within ECD_02186at 2263.660 kb on - strand, within ECD_02186at 2263.660 kb on - strand, within ECD_02186at 2263.719 kb on - strandat 2263.758 kb on - strandat 2263.764 kb on + strandat 2263.979 kb on + strand, within ECD_02187at 2263.980 kb on - strand, within ECD_02187at 2264.117 kb on - strand, within ECD_02187at 2264.524 kb on - strand, within ECD_02187at 2264.586 kb on - strand, within ECD_02187at 2264.711 kb on + strand, within ECD_02187

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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2,262,504 + ECD_02183 0.86 -0.3
2,262,536 + ECD_02183 0.88 +0.9
2,262,536 + ECD_02183 0.88 +1.2
2,262,593 + -0.2
2,262,593 + +2.0
2,262,593 + +1.6
2,262,653 + -1.6
2,262,653 + +2.3
2,263,499 - ECD_02186 0.20 +1.0
2,263,548 - ECD_02186 0.38 -0.4
2,263,656 - ECD_02186 0.79 -1.0
2,263,660 - ECD_02186 0.80 -0.1
2,263,660 - ECD_02186 0.80 +1.4
2,263,660 - ECD_02186 0.80 -0.7
2,263,660 - ECD_02186 0.80 +0.0
2,263,660 - ECD_02186 0.80 -1.7
2,263,660 - ECD_02186 0.80 -1.3
2,263,660 - ECD_02186 0.80 -0.7
2,263,719 - -0.0
2,263,758 - +0.7
2,263,764 + +0.9
2,263,979 + ECD_02187 0.12 -1.1
2,263,980 - ECD_02187 0.12 -0.9
2,264,117 - ECD_02187 0.22 -0.0
2,264,524 - ECD_02187 0.52 -0.6
2,264,586 - ECD_02187 0.56 -0.9
2,264,711 + ECD_02187 0.66 +0.8

Or see this region's nucleotide sequence