Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02176 and ECD_02177 are separated by 278 nucleotides ECD_02177 and ECD_02178 are separated by 38 nucleotides ECD_02178 and ECD_02179 are separated by 289 nucleotides
ECD_02176: ECD_02176 - outer membrane protein, putative porin, at 2,253,907 to 2,254,449
_02176
ECD_02177: ECD_02177 - nucleoside triphosphatase, at 2,254,728 to 2,255,153
_02177
ECD_02178: ECD_02178 - putative LPS core heptose(II)-phosphate phosphatase, at 2,255,192 to 2,255,794
_02178
ECD_02179: ECD_02179 - uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent, at 2,256,084 to 2,257,241
_02179
Position (kb)
2255
2256 Strain fitness (log2 ratio)
-1
0
1
2 at 2254.356 kb on - strand, within ECD_02176 at 2254.502 kb on - strand at 2254.552 kb on - strand at 2254.747 kb on + strand at 2254.776 kb on + strand, within ECD_02177 at 2255.068 kb on - strand, within ECD_02177 at 2255.273 kb on - strand, within ECD_02178 at 2255.303 kb on - strand, within ECD_02178 at 2255.303 kb on - strand, within ECD_02178 at 2255.305 kb on - strand, within ECD_02178 at 2255.305 kb on - strand, within ECD_02178 at 2255.305 kb on - strand, within ECD_02178 at 2255.305 kb on - strand, within ECD_02178 at 2255.305 kb on - strand, within ECD_02178 at 2255.513 kb on - strand, within ECD_02178 at 2255.561 kb on - strand, within ECD_02178 at 2255.561 kb on - strand, within ECD_02178 at 2255.666 kb on - strand, within ECD_02178 at 2255.693 kb on - strand, within ECD_02178 at 2255.755 kb on - strand at 2255.808 kb on - strand at 2255.881 kb on - strand at 2256.039 kb on + strand at 2256.064 kb on + strand at 2256.066 kb on + strand at 2256.066 kb on + strand at 2256.078 kb on + strand at 2256.161 kb on + strand at 2256.287 kb on + strand, within ECD_02179 at 2256.365 kb on + strand, within ECD_02179 at 2256.455 kb on + strand, within ECD_02179 at 2256.489 kb on + strand, within ECD_02179 at 2256.489 kb on + strand, within ECD_02179 at 2256.489 kb on + strand, within ECD_02179 at 2256.509 kb on + strand, within ECD_02179 at 2256.581 kb on + strand, within ECD_02179 at 2256.585 kb on + strand, within ECD_02179 at 2256.585 kb on + strand, within ECD_02179 at 2256.588 kb on + strand, within ECD_02179 at 2256.602 kb on + strand, within ECD_02179 at 2256.644 kb on + strand, within ECD_02179 at 2256.650 kb on + strand, within ECD_02179
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 2,254,356 - ECD_02176 0.83 -1.0 2,254,502 - -1.7 2,254,552 - +0.2 2,254,747 + -1.2 2,254,776 + ECD_02177 0.11 -0.1 2,255,068 - ECD_02177 0.80 +0.6 2,255,273 - ECD_02178 0.13 +1.5 2,255,303 - ECD_02178 0.18 +0.4 2,255,303 - ECD_02178 0.18 +0.4 2,255,305 - ECD_02178 0.19 -0.1 2,255,305 - ECD_02178 0.19 +0.7 2,255,305 - ECD_02178 0.19 -0.6 2,255,305 - ECD_02178 0.19 +0.1 2,255,305 - ECD_02178 0.19 +0.3 2,255,513 - ECD_02178 0.53 +2.3 2,255,561 - ECD_02178 0.61 +1.6 2,255,561 - ECD_02178 0.61 -0.2 2,255,666 - ECD_02178 0.79 +0.0 2,255,693 - ECD_02178 0.83 +0.4 2,255,755 - -0.3 2,255,808 - -0.2 2,255,881 - -0.8 2,256,039 + +0.1 2,256,064 + -0.6 2,256,066 + -0.6 2,256,066 + +0.1 2,256,078 + +0.1 2,256,161 + -0.5 2,256,287 + ECD_02179 0.18 -0.7 2,256,365 + ECD_02179 0.24 -0.4 2,256,455 + ECD_02179 0.32 +1.5 2,256,489 + ECD_02179 0.35 -0.9 2,256,489 + ECD_02179 0.35 -0.6 2,256,489 + ECD_02179 0.35 -1.2 2,256,509 + ECD_02179 0.37 +0.3 2,256,581 + ECD_02179 0.43 -0.1 2,256,585 + ECD_02179 0.43 +0.6 2,256,585 + ECD_02179 0.43 -0.1 2,256,588 + ECD_02179 0.44 +1.1 2,256,602 + ECD_02179 0.45 +0.8 2,256,644 + ECD_02179 0.48 +0.6 2,256,650 + ECD_02179 0.49 -0.8
Or see this region's nucleotide sequence