Strain Fitness in Escherichia coli BL21 around ECD_02178

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02176 and ECD_02177 are separated by 278 nucleotidesECD_02177 and ECD_02178 are separated by 38 nucleotidesECD_02178 and ECD_02179 are separated by 289 nucleotides ECD_02176: ECD_02176 - outer membrane protein, putative porin, at 2,253,907 to 2,254,449 _02176 ECD_02177: ECD_02177 - nucleoside triphosphatase, at 2,254,728 to 2,255,153 _02177 ECD_02178: ECD_02178 - putative LPS core heptose(II)-phosphate phosphatase, at 2,255,192 to 2,255,794 _02178 ECD_02179: ECD_02179 - uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent, at 2,256,084 to 2,257,241 _02179 Position (kb) 2255 2256Strain fitness (log2 ratio) -1 0 1 2at 2254.356 kb on - strand, within ECD_02176at 2254.502 kb on - strandat 2254.552 kb on - strandat 2254.747 kb on + strandat 2254.776 kb on + strand, within ECD_02177at 2255.068 kb on - strand, within ECD_02177at 2255.273 kb on - strand, within ECD_02178at 2255.303 kb on - strand, within ECD_02178at 2255.303 kb on - strand, within ECD_02178at 2255.305 kb on - strand, within ECD_02178at 2255.305 kb on - strand, within ECD_02178at 2255.305 kb on - strand, within ECD_02178at 2255.305 kb on - strand, within ECD_02178at 2255.305 kb on - strand, within ECD_02178at 2255.513 kb on - strand, within ECD_02178at 2255.561 kb on - strand, within ECD_02178at 2255.561 kb on - strand, within ECD_02178at 2255.666 kb on - strand, within ECD_02178at 2255.693 kb on - strand, within ECD_02178at 2255.755 kb on - strandat 2255.808 kb on - strandat 2255.881 kb on - strandat 2256.039 kb on + strandat 2256.064 kb on + strandat 2256.066 kb on + strandat 2256.066 kb on + strandat 2256.078 kb on + strandat 2256.161 kb on + strandat 2256.287 kb on + strand, within ECD_02179at 2256.365 kb on + strand, within ECD_02179at 2256.455 kb on + strand, within ECD_02179at 2256.489 kb on + strand, within ECD_02179at 2256.489 kb on + strand, within ECD_02179at 2256.489 kb on + strand, within ECD_02179at 2256.509 kb on + strand, within ECD_02179at 2256.581 kb on + strand, within ECD_02179at 2256.585 kb on + strand, within ECD_02179at 2256.585 kb on + strand, within ECD_02179at 2256.588 kb on + strand, within ECD_02179at 2256.602 kb on + strand, within ECD_02179at 2256.644 kb on + strand, within ECD_02179at 2256.650 kb on + strand, within ECD_02179

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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2,254,356 - ECD_02176 0.83 -1.0
2,254,502 - -1.7
2,254,552 - +0.2
2,254,747 + -1.2
2,254,776 + ECD_02177 0.11 -0.1
2,255,068 - ECD_02177 0.80 +0.6
2,255,273 - ECD_02178 0.13 +1.5
2,255,303 - ECD_02178 0.18 +0.4
2,255,303 - ECD_02178 0.18 +0.4
2,255,305 - ECD_02178 0.19 -0.1
2,255,305 - ECD_02178 0.19 +0.7
2,255,305 - ECD_02178 0.19 -0.6
2,255,305 - ECD_02178 0.19 +0.1
2,255,305 - ECD_02178 0.19 +0.3
2,255,513 - ECD_02178 0.53 +2.3
2,255,561 - ECD_02178 0.61 +1.6
2,255,561 - ECD_02178 0.61 -0.2
2,255,666 - ECD_02178 0.79 +0.0
2,255,693 - ECD_02178 0.83 +0.4
2,255,755 - -0.3
2,255,808 - -0.2
2,255,881 - -0.8
2,256,039 + +0.1
2,256,064 + -0.6
2,256,066 + -0.6
2,256,066 + +0.1
2,256,078 + +0.1
2,256,161 + -0.5
2,256,287 + ECD_02179 0.18 -0.7
2,256,365 + ECD_02179 0.24 -0.4
2,256,455 + ECD_02179 0.32 +1.5
2,256,489 + ECD_02179 0.35 -0.9
2,256,489 + ECD_02179 0.35 -0.6
2,256,489 + ECD_02179 0.35 -1.2
2,256,509 + ECD_02179 0.37 +0.3
2,256,581 + ECD_02179 0.43 -0.1
2,256,585 + ECD_02179 0.43 +0.6
2,256,585 + ECD_02179 0.43 -0.1
2,256,588 + ECD_02179 0.44 +1.1
2,256,602 + ECD_02179 0.45 +0.8
2,256,644 + ECD_02179 0.48 +0.6
2,256,650 + ECD_02179 0.49 -0.8

Or see this region's nucleotide sequence