Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02174 and ECD_02175 are separated by 219 nucleotides ECD_02175 and ECD_02176 are separated by 99 nucleotides ECD_02176 and ECD_02177 are separated by 278 nucleotides
ECD_02174: ECD_02174 - putative DNA-binding transcriptional regulator for the rhm operon, at 2,251,603 to 2,252,385
_02174
ECD_02175: ECD_02175 - inactive PncC family protein, at 2,252,605 to 2,253,807
_02175
ECD_02176: ECD_02176 - outer membrane protein, putative porin, at 2,253,907 to 2,254,449
_02176
ECD_02177: ECD_02177 - nucleoside triphosphatase, at 2,254,728 to 2,255,153
_02177
Position (kb)
2252
2253
2254 Strain fitness (log2 ratio)
-2
-1
0
1 at 2251.688 kb on + strand, within ECD_02174 at 2251.800 kb on - strand, within ECD_02174 at 2251.818 kb on - strand, within ECD_02174 at 2251.818 kb on - strand, within ECD_02174 at 2252.087 kb on - strand, within ECD_02174 at 2252.259 kb on - strand, within ECD_02174 at 2252.401 kb on + strand at 2252.402 kb on - strand at 2252.615 kb on - strand at 2253.205 kb on + strand, within ECD_02175 at 2253.206 kb on - strand, within ECD_02175 at 2253.381 kb on + strand, within ECD_02175 at 2253.767 kb on - strand at 2253.855 kb on + strand at 2253.865 kb on + strand at 2254.098 kb on - strand, within ECD_02176 at 2254.098 kb on - strand, within ECD_02176 at 2254.098 kb on - strand, within ECD_02176 at 2254.098 kb on - strand, within ECD_02176 at 2254.098 kb on - strand, within ECD_02176 at 2254.098 kb on - strand, within ECD_02176 at 2254.101 kb on - strand, within ECD_02176 at 2254.181 kb on + strand, within ECD_02176 at 2254.356 kb on - strand, within ECD_02176 at 2254.502 kb on - strand at 2254.552 kb on - strand at 2254.747 kb on + strand at 2254.776 kb on + strand, within ECD_02177
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 2,251,688 + ECD_02174 0.11 -0.4 2,251,800 - ECD_02174 0.25 +0.7 2,251,818 - ECD_02174 0.27 -1.6 2,251,818 - ECD_02174 0.27 -0.0 2,252,087 - ECD_02174 0.62 +1.0 2,252,259 - ECD_02174 0.84 -0.3 2,252,401 + +0.5 2,252,402 - -0.1 2,252,615 - -1.6 2,253,205 + ECD_02175 0.50 -0.3 2,253,206 - ECD_02175 0.50 -2.6 2,253,381 + ECD_02175 0.65 +0.1 2,253,767 - +0.5 2,253,855 + +0.7 2,253,865 + -1.6 2,254,098 - ECD_02176 0.35 +0.7 2,254,098 - ECD_02176 0.35 +0.1 2,254,098 - ECD_02176 0.35 +0.2 2,254,098 - ECD_02176 0.35 -1.3 2,254,098 - ECD_02176 0.35 -0.6 2,254,098 - ECD_02176 0.35 -0.3 2,254,101 - ECD_02176 0.36 +0.3 2,254,181 + ECD_02176 0.50 +0.3 2,254,356 - ECD_02176 0.83 -1.0 2,254,502 - -1.7 2,254,552 - +0.2 2,254,747 + -1.2 2,254,776 + ECD_02177 0.11 -0.1
Or see this region's nucleotide sequence