Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02107 and ECD_02108 are separated by 0 nucleotides ECD_02108 and ECD_02109 overlap by 1 nucleotides
ECD_02107: ECD_02107 - microcin C ABC transporter periplasmic binding protein, at 2,167,213 to 2,169,027
_02107
ECD_02108: ECD_02108 - microcin C ABC transporter permease, at 2,169,028 to 2,170,122
_02108
ECD_02109: ECD_02109 - microcin C ABC transporter permease, at 2,170,122 to 2,171,147
_02109
Position (kb)
2169
2170
2171 Strain fitness (log2 ratio)
-1
0
1
2 at 2168.065 kb on - strand, within ECD_02107 at 2168.193 kb on + strand, within ECD_02107 at 2168.538 kb on + strand, within ECD_02107 at 2168.737 kb on + strand, within ECD_02107 at 2168.937 kb on - strand at 2168.974 kb on + strand at 2169.026 kb on - strand at 2169.084 kb on + strand at 2169.235 kb on - strand, within ECD_02108 at 2169.335 kb on - strand, within ECD_02108 at 2169.466 kb on - strand, within ECD_02108 at 2169.510 kb on + strand, within ECD_02108 at 2169.795 kb on + strand, within ECD_02108 at 2169.830 kb on + strand, within ECD_02108 at 2170.427 kb on + strand, within ECD_02109 at 2170.717 kb on + strand, within ECD_02109 at 2170.717 kb on + strand, within ECD_02109 at 2170.877 kb on + strand, within ECD_02109 at 2170.927 kb on + strand, within ECD_02109 at 2170.931 kb on + strand, within ECD_02109
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 2,168,065 - ECD_02107 0.47 +0.1 2,168,193 + ECD_02107 0.54 -0.1 2,168,538 + ECD_02107 0.73 -0.3 2,168,737 + ECD_02107 0.84 -0.0 2,168,937 - -0.4 2,168,974 + +1.6 2,169,026 - +0.2 2,169,084 + -0.2 2,169,235 - ECD_02108 0.19 +1.5 2,169,335 - ECD_02108 0.28 +1.3 2,169,466 - ECD_02108 0.40 -0.5 2,169,510 + ECD_02108 0.44 +1.3 2,169,795 + ECD_02108 0.70 -0.4 2,169,830 + ECD_02108 0.73 +0.3 2,170,427 + ECD_02109 0.30 +0.7 2,170,717 + ECD_02109 0.58 -1.3 2,170,717 + ECD_02109 0.58 -1.5 2,170,877 + ECD_02109 0.74 -1.4 2,170,927 + ECD_02109 0.78 +2.7 2,170,931 + ECD_02109 0.79 +0.3
Or see this region's nucleotide sequence