Strain Fitness in Escherichia coli BL21 around ECD_02087

Experiment: Laval1257

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02086 and ECD_02087 are separated by 98 nucleotidesECD_02087 and ECD_02088 are separated by 73 nucleotidesECD_02088 and ECD_02089 are separated by 2 nucleotides ECD_02086: ECD_02086 - putative DNA-binding transcriptional regulator, at 2,143,636 to 2,144,517 _02086 ECD_02087: ECD_02087 - UPF0324 family inner membrane protein, at 2,144,616 to 2,145,665 _02087 ECD_02088: ECD_02088 - endonuclease IV with intrinsic 3'-5' exonuclease activity, at 2,145,739 to 2,146,596 _02088 ECD_02089: ECD_02089 - putative kinase, at 2,146,599 to 2,147,687 _02089 Position (kb) 2144 2145 2146Strain fitness (log2 ratio) -2 -1 0 1 2at 2143.714 kb on + strandat 2143.715 kb on - strandat 2143.715 kb on - strandat 2143.715 kb on - strandat 2143.715 kb on - strandat 2143.729 kb on - strand, within ECD_02086at 2143.865 kb on - strand, within ECD_02086at 2143.907 kb on - strand, within ECD_02086at 2143.910 kb on + strand, within ECD_02086at 2143.911 kb on - strand, within ECD_02086at 2144.214 kb on - strand, within ECD_02086at 2144.227 kb on - strand, within ECD_02086at 2144.238 kb on - strand, within ECD_02086at 2144.238 kb on - strand, within ECD_02086at 2144.477 kb on - strandat 2144.625 kb on - strandat 2144.648 kb on + strandat 2144.648 kb on + strandat 2144.649 kb on - strandat 2144.649 kb on - strandat 2144.649 kb on - strandat 2144.850 kb on + strand, within ECD_02087at 2144.851 kb on - strand, within ECD_02087at 2144.854 kb on + strand, within ECD_02087at 2144.877 kb on + strand, within ECD_02087at 2144.957 kb on + strand, within ECD_02087at 2145.041 kb on + strand, within ECD_02087at 2145.167 kb on - strand, within ECD_02087at 2145.191 kb on + strand, within ECD_02087at 2145.213 kb on + strand, within ECD_02087at 2145.213 kb on + strand, within ECD_02087at 2145.213 kb on + strand, within ECD_02087at 2145.214 kb on - strand, within ECD_02087at 2145.446 kb on + strand, within ECD_02087at 2145.636 kb on - strandat 2145.671 kb on + strandat 2145.746 kb on - strandat 2145.919 kb on + strand, within ECD_02088at 2145.952 kb on + strand, within ECD_02088at 2146.013 kb on + strand, within ECD_02088at 2146.206 kb on + strand, within ECD_02088at 2146.275 kb on + strand, within ECD_02088at 2146.275 kb on + strand, within ECD_02088at 2146.276 kb on - strand, within ECD_02088at 2146.353 kb on + strand, within ECD_02088at 2146.365 kb on + strand, within ECD_02088at 2146.370 kb on - strand, within ECD_02088

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
remove
2,143,714 + +0.7
2,143,715 - -0.0
2,143,715 - +0.9
2,143,715 - -0.4
2,143,715 - -0.2
2,143,729 - ECD_02086 0.11 -0.0
2,143,865 - ECD_02086 0.26 +1.2
2,143,907 - ECD_02086 0.31 +0.9
2,143,910 + ECD_02086 0.31 +0.1
2,143,911 - ECD_02086 0.31 +1.1
2,144,214 - ECD_02086 0.66 +0.7
2,144,227 - ECD_02086 0.67 -0.0
2,144,238 - ECD_02086 0.68 +0.3
2,144,238 - ECD_02086 0.68 -0.9
2,144,477 - -0.0
2,144,625 - -0.5
2,144,648 + -0.5
2,144,648 + +1.6
2,144,649 - +0.3
2,144,649 - +0.5
2,144,649 - -0.5
2,144,850 + ECD_02087 0.22 -0.7
2,144,851 - ECD_02087 0.22 +1.1
2,144,854 + ECD_02087 0.23 +2.7
2,144,877 + ECD_02087 0.25 -0.3
2,144,957 + ECD_02087 0.32 +1.3
2,145,041 + ECD_02087 0.40 +0.7
2,145,167 - ECD_02087 0.52 +0.7
2,145,191 + ECD_02087 0.55 -1.6
2,145,213 + ECD_02087 0.57 -0.7
2,145,213 + ECD_02087 0.57 -0.3
2,145,213 + ECD_02087 0.57 +0.3
2,145,214 - ECD_02087 0.57 -0.3
2,145,446 + ECD_02087 0.79 +1.3
2,145,636 - -0.3
2,145,671 + +0.5
2,145,746 - -2.1
2,145,919 + ECD_02088 0.21 -0.8
2,145,952 + ECD_02088 0.25 -0.5
2,146,013 + ECD_02088 0.32 -0.4
2,146,206 + ECD_02088 0.54 -1.1
2,146,275 + ECD_02088 0.62 +0.4
2,146,275 + ECD_02088 0.62 +0.9
2,146,276 - ECD_02088 0.63 +0.5
2,146,353 + ECD_02088 0.72 -0.1
2,146,365 + ECD_02088 0.73 -0.2
2,146,370 - ECD_02088 0.74 +0.7

Or see this region's nucleotide sequence