Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02086 and ECD_02087 are separated by 98 nucleotides ECD_02087 and ECD_02088 are separated by 73 nucleotides ECD_02088 and ECD_02089 are separated by 2 nucleotides
ECD_02086: ECD_02086 - putative DNA-binding transcriptional regulator, at 2,143,636 to 2,144,517
_02086
ECD_02087: ECD_02087 - UPF0324 family inner membrane protein, at 2,144,616 to 2,145,665
_02087
ECD_02088: ECD_02088 - endonuclease IV with intrinsic 3'-5' exonuclease activity, at 2,145,739 to 2,146,596
_02088
ECD_02089: ECD_02089 - putative kinase, at 2,146,599 to 2,147,687
_02089
Position (kb)
2144
2145
2146 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2143.714 kb on + strand at 2143.715 kb on - strand at 2143.715 kb on - strand at 2143.715 kb on - strand at 2143.715 kb on - strand at 2143.729 kb on - strand, within ECD_02086 at 2143.865 kb on - strand, within ECD_02086 at 2143.907 kb on - strand, within ECD_02086 at 2143.910 kb on + strand, within ECD_02086 at 2143.911 kb on - strand, within ECD_02086 at 2144.214 kb on - strand, within ECD_02086 at 2144.227 kb on - strand, within ECD_02086 at 2144.238 kb on - strand, within ECD_02086 at 2144.238 kb on - strand, within ECD_02086 at 2144.477 kb on - strand at 2144.625 kb on - strand at 2144.648 kb on + strand at 2144.648 kb on + strand at 2144.649 kb on - strand at 2144.649 kb on - strand at 2144.649 kb on - strand at 2144.850 kb on + strand, within ECD_02087 at 2144.851 kb on - strand, within ECD_02087 at 2144.854 kb on + strand, within ECD_02087 at 2144.877 kb on + strand, within ECD_02087 at 2144.957 kb on + strand, within ECD_02087 at 2145.041 kb on + strand, within ECD_02087 at 2145.167 kb on - strand, within ECD_02087 at 2145.191 kb on + strand, within ECD_02087 at 2145.213 kb on + strand, within ECD_02087 at 2145.213 kb on + strand, within ECD_02087 at 2145.213 kb on + strand, within ECD_02087 at 2145.214 kb on - strand, within ECD_02087 at 2145.446 kb on + strand, within ECD_02087 at 2145.636 kb on - strand at 2145.671 kb on + strand at 2145.746 kb on - strand at 2145.919 kb on + strand, within ECD_02088 at 2145.952 kb on + strand, within ECD_02088 at 2146.013 kb on + strand, within ECD_02088 at 2146.206 kb on + strand, within ECD_02088 at 2146.275 kb on + strand, within ECD_02088 at 2146.275 kb on + strand, within ECD_02088 at 2146.276 kb on - strand, within ECD_02088 at 2146.353 kb on + strand, within ECD_02088 at 2146.365 kb on + strand, within ECD_02088 at 2146.370 kb on - strand, within ECD_02088
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 2,143,714 + +0.7 2,143,715 - -0.0 2,143,715 - +0.9 2,143,715 - -0.4 2,143,715 - -0.2 2,143,729 - ECD_02086 0.11 -0.0 2,143,865 - ECD_02086 0.26 +1.2 2,143,907 - ECD_02086 0.31 +0.9 2,143,910 + ECD_02086 0.31 +0.1 2,143,911 - ECD_02086 0.31 +1.1 2,144,214 - ECD_02086 0.66 +0.7 2,144,227 - ECD_02086 0.67 -0.0 2,144,238 - ECD_02086 0.68 +0.3 2,144,238 - ECD_02086 0.68 -0.9 2,144,477 - -0.0 2,144,625 - -0.5 2,144,648 + -0.5 2,144,648 + +1.6 2,144,649 - +0.3 2,144,649 - +0.5 2,144,649 - -0.5 2,144,850 + ECD_02087 0.22 -0.7 2,144,851 - ECD_02087 0.22 +1.1 2,144,854 + ECD_02087 0.23 +2.7 2,144,877 + ECD_02087 0.25 -0.3 2,144,957 + ECD_02087 0.32 +1.3 2,145,041 + ECD_02087 0.40 +0.7 2,145,167 - ECD_02087 0.52 +0.7 2,145,191 + ECD_02087 0.55 -1.6 2,145,213 + ECD_02087 0.57 -0.7 2,145,213 + ECD_02087 0.57 -0.3 2,145,213 + ECD_02087 0.57 +0.3 2,145,214 - ECD_02087 0.57 -0.3 2,145,446 + ECD_02087 0.79 +1.3 2,145,636 - -0.3 2,145,671 + +0.5 2,145,746 - -2.1 2,145,919 + ECD_02088 0.21 -0.8 2,145,952 + ECD_02088 0.25 -0.5 2,146,013 + ECD_02088 0.32 -0.4 2,146,206 + ECD_02088 0.54 -1.1 2,146,275 + ECD_02088 0.62 +0.4 2,146,275 + ECD_02088 0.62 +0.9 2,146,276 - ECD_02088 0.63 +0.5 2,146,353 + ECD_02088 0.72 -0.1 2,146,365 + ECD_02088 0.73 -0.2 2,146,370 - ECD_02088 0.74 +0.7
Or see this region's nucleotide sequence