Strain Fitness in Escherichia coli BL21 around ECD_01972

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01970 and ECD_01971 are separated by 21 nucleotidesECD_01971 and ECD_01972 are separated by 91 nucleotidesECD_01972 and ECD_01973 are separated by 317 nucleotides ECD_01970: ECD_01970 - suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane-anchored periplasmic protein, at 2,038,766 to 2,040,619 _01970 ECD_01971: ECD_01971 - deoxycytidine triphosphate deaminase; dCTP deaminase, at 2,040,641 to 2,041,222 _01971 ECD_01972: ECD_01972 - uridine/cytidine kinase, at 2,041,314 to 2,041,955 _01972 ECD_01973: ECD_01973 - putative diguanylate cyclase, at 2,042,273 to 2,045,590 _01973 Position (kb) 2041 2042Strain fitness (log2 ratio) -3 -2 -1 0 1at 2040.437 kb on - strandat 2040.437 kb on - strandat 2040.437 kb on - strandat 2040.518 kb on - strandat 2040.520 kb on - strandat 2040.520 kb on - strandat 2040.520 kb on - strandat 2041.650 kb on - strand, within ECD_01972at 2041.656 kb on - strand, within ECD_01972at 2041.656 kb on - strand, within ECD_01972at 2041.667 kb on - strand, within ECD_01972at 2041.769 kb on + strand, within ECD_01972at 2041.808 kb on - strand, within ECD_01972at 2042.298 kb on + strandat 2042.298 kb on + strandat 2042.298 kb on + strandat 2042.444 kb on + strandat 2042.501 kb on - strandat 2042.595 kb on + strandat 2042.751 kb on + strand, within ECD_01973at 2042.929 kb on + strand, within ECD_01973

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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2,040,437 - -0.3
2,040,437 - +0.8
2,040,437 - -0.2
2,040,518 - -1.2
2,040,520 - +1.0
2,040,520 - -0.2
2,040,520 - -0.0
2,041,650 - ECD_01972 0.52 +0.4
2,041,656 - ECD_01972 0.53 +0.1
2,041,656 - ECD_01972 0.53 -1.6
2,041,667 - ECD_01972 0.55 -3.0
2,041,769 + ECD_01972 0.71 +1.3
2,041,808 - ECD_01972 0.77 -1.2
2,042,298 + +0.6
2,042,298 + +0.4
2,042,298 + -2.5
2,042,444 + -0.1
2,042,501 - +1.4
2,042,595 + -1.2
2,042,751 + ECD_01973 0.14 +1.6
2,042,929 + ECD_01973 0.20 +0.5

Or see this region's nucleotide sequence