Strain Fitness in Escherichia coli BL21 around ECD_01955

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01954 and ECD_01955 are separated by 192 nucleotidesECD_01955 and ECD_01956 are separated by 2 nucleotides ECD_01954: ECD_01954 - phosphomannomutase, at 2,020,527 to 2,021,897 _01954 ECD_01955: ECD_01955 - mannose-1-phosphate guanyltransferase, at 2,022,090 to 2,023,526 _01955 ECD_01956: ECD_01956 - putative glycosyl transferase, at 2,023,529 to 2,024,752 _01956 Position (kb) 2022 2023 2024Strain fitness (log2 ratio) -1 0 1at 2021.613 kb on - strand, within ECD_01954at 2021.951 kb on + strandat 2021.965 kb on + strandat 2022.012 kb on + strandat 2022.222 kb on - strandat 2022.255 kb on - strand, within ECD_01955at 2022.400 kb on + strand, within ECD_01955at 2022.400 kb on + strand, within ECD_01955at 2022.432 kb on + strand, within ECD_01955at 2022.592 kb on + strand, within ECD_01955at 2022.592 kb on + strand, within ECD_01955at 2022.593 kb on - strand, within ECD_01955at 2022.914 kb on + strand, within ECD_01955at 2023.069 kb on - strand, within ECD_01955at 2023.259 kb on + strand, within ECD_01955at 2023.280 kb on + strand, within ECD_01955at 2023.281 kb on - strand, within ECD_01955at 2023.549 kb on + strandat 2023.760 kb on + strand, within ECD_01956at 2023.869 kb on + strand, within ECD_01956

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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2,021,613 - ECD_01954 0.79 -0.1
2,021,951 + -1.6
2,021,965 + +0.1
2,022,012 + -1.1
2,022,222 - +0.1
2,022,255 - ECD_01955 0.11 -1.2
2,022,400 + ECD_01955 0.22 -0.3
2,022,400 + ECD_01955 0.22 -0.4
2,022,432 + ECD_01955 0.24 -0.9
2,022,592 + ECD_01955 0.35 -0.7
2,022,592 + ECD_01955 0.35 +0.7
2,022,593 - ECD_01955 0.35 -1.1
2,022,914 + ECD_01955 0.57 -1.4
2,023,069 - ECD_01955 0.68 +0.2
2,023,259 + ECD_01955 0.81 -0.6
2,023,280 + ECD_01955 0.83 -1.1
2,023,281 - ECD_01955 0.83 -0.4
2,023,549 + -0.4
2,023,760 + ECD_01956 0.19 -0.7
2,023,869 + ECD_01956 0.28 +0.9

Or see this region's nucleotide sequence