Strain Fitness in Escherichia coli BL21 around ECD_01953

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01952 and ECD_01953 are separated by 1 nucleotidesECD_01953 and ECD_01954 are separated by 54 nucleotides ECD_01952: ECD_01952 - putative colanic acid exporter, at 2,017,598 to 2,019,076 _01952 ECD_01953: ECD_01953 - colanic biosynthesis UDP-glucose lipid carrier transferase, at 2,019,078 to 2,020,472 _01953 ECD_01954: ECD_01954 - phosphomannomutase, at 2,020,527 to 2,021,897 _01954 Position (kb) 2019 2020 2021Strain fitness (log2 ratio) -2 -1 0 1 2at 2018.107 kb on + strand, within ECD_01952at 2018.217 kb on + strand, within ECD_01952at 2018.218 kb on - strand, within ECD_01952at 2018.340 kb on + strand, within ECD_01952at 2018.399 kb on - strand, within ECD_01952at 2018.835 kb on + strand, within ECD_01952at 2018.846 kb on - strand, within ECD_01952at 2019.069 kb on - strandat 2019.230 kb on + strand, within ECD_01953at 2019.281 kb on - strand, within ECD_01953at 2019.914 kb on + strand, within ECD_01953at 2020.085 kb on + strand, within ECD_01953at 2020.337 kb on - strandat 2020.374 kb on + strandat 2020.375 kb on - strandat 2021.004 kb on - strand, within ECD_01954

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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2,018,107 + ECD_01952 0.34 -0.9
2,018,217 + ECD_01952 0.42 +0.3
2,018,218 - ECD_01952 0.42 -1.4
2,018,340 + ECD_01952 0.50 -0.2
2,018,399 - ECD_01952 0.54 +1.8
2,018,835 + ECD_01952 0.84 +1.5
2,018,846 - ECD_01952 0.84 -2.1
2,019,069 - +0.8
2,019,230 + ECD_01953 0.11 -1.1
2,019,281 - ECD_01953 0.15 -2.1
2,019,914 + ECD_01953 0.60 +0.3
2,020,085 + ECD_01953 0.72 -0.2
2,020,337 - +1.3
2,020,374 + -1.4
2,020,375 - +1.3
2,021,004 - ECD_01954 0.35 -0.2

Or see this region's nucleotide sequence