Strain Fitness in Escherichia coli BL21 around ECD_01876

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01875 and ECD_01876 are separated by 61 nucleotidesECD_01876 and ECD_t00029 are separated by 195 nucleotidesECD_t00029 and ECD_t00030 are separated by 12 nucleotidesECD_t00030 and ECD_t00031 are separated by 53 nucleotidesECD_t00031 and ECD_01877 are separated by 151 nucleotides ECD_01875: ECD_01875 - tyrosine transporter, at 1,934,823 to 1,936,034 _01875 ECD_01876: ECD_01876 - UPF0149 family protein, at 1,936,096 to 1,936,761 _01876 ECD_t00029: ECD_t00029 - tRNA-Leu, at 1,936,957 to 1,937,043 _t00029 ECD_t00030: ECD_t00030 - tRNA-Cys, at 1,937,056 to 1,937,129 _t00030 ECD_t00031: ECD_t00031 - tRNA-Gly, at 1,937,183 to 1,937,258 _t00031 ECD_01877: ECD_01877 - phosphatidylglycerophosphate synthetase, at 1,937,410 to 1,937,958 _01877 Position (kb) 1936 1937Strain fitness (log2 ratio) -1 0 1at 1935.096 kb on + strand, within ECD_01875at 1935.114 kb on + strand, within ECD_01875at 1935.167 kb on + strand, within ECD_01875at 1935.438 kb on + strand, within ECD_01875at 1935.438 kb on + strand, within ECD_01875at 1935.438 kb on + strand, within ECD_01875at 1935.440 kb on + strand, within ECD_01875at 1935.458 kb on + strand, within ECD_01875at 1935.463 kb on + strand, within ECD_01875at 1935.476 kb on + strand, within ECD_01875at 1935.491 kb on + strand, within ECD_01875at 1935.509 kb on + strand, within ECD_01875at 1935.703 kb on + strand, within ECD_01875at 1935.740 kb on + strand, within ECD_01875at 1935.773 kb on + strand, within ECD_01875at 1935.807 kb on + strand, within ECD_01875at 1935.883 kb on + strand, within ECD_01875at 1935.974 kb on + strandat 1936.401 kb on - strand, within ECD_01876at 1936.516 kb on - strand, within ECD_01876at 1936.516 kb on - strand, within ECD_01876at 1936.578 kb on - strand, within ECD_01876at 1936.798 kb on - strandat 1936.803 kb on - strandat 1936.904 kb on - strandat 1936.927 kb on - strandat 1936.941 kb on - strandat 1937.292 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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1,935,096 + ECD_01875 0.23 -1.7
1,935,114 + ECD_01875 0.24 +0.0
1,935,167 + ECD_01875 0.28 +0.5
1,935,438 + ECD_01875 0.51 +0.8
1,935,438 + ECD_01875 0.51 -0.1
1,935,438 + ECD_01875 0.51 -1.6
1,935,440 + ECD_01875 0.51 +0.6
1,935,458 + ECD_01875 0.52 +0.2
1,935,463 + ECD_01875 0.53 -0.4
1,935,476 + ECD_01875 0.54 -0.9
1,935,491 + ECD_01875 0.55 -1.7
1,935,509 + ECD_01875 0.57 -0.6
1,935,703 + ECD_01875 0.73 +0.6
1,935,740 + ECD_01875 0.76 -1.5
1,935,773 + ECD_01875 0.78 +1.7
1,935,807 + ECD_01875 0.81 +0.1
1,935,883 + ECD_01875 0.87 +0.5
1,935,974 + -0.7
1,936,401 - ECD_01876 0.46 -0.4
1,936,516 - ECD_01876 0.63 -1.5
1,936,516 - ECD_01876 0.63 -0.7
1,936,578 - ECD_01876 0.72 -0.8
1,936,798 - +0.5
1,936,803 - -0.5
1,936,904 - -0.7
1,936,927 - -0.5
1,936,941 - -0.8
1,937,292 - +0.8

Or see this region's nucleotide sequence