Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01875 and ECD_01876 are separated by 61 nucleotides ECD_01876 and ECD_t00029 are separated by 195 nucleotides ECD_t00029 and ECD_t00030 are separated by 12 nucleotides ECD_t00030 and ECD_t00031 are separated by 53 nucleotides ECD_t00031 and ECD_01877 are separated by 151 nucleotides
ECD_01875: ECD_01875 - tyrosine transporter, at 1,934,823 to 1,936,034
_01875
ECD_01876: ECD_01876 - UPF0149 family protein, at 1,936,096 to 1,936,761
_01876
ECD_t00029: ECD_t00029 - tRNA-Leu, at 1,936,957 to 1,937,043
_t00029
ECD_t00030: ECD_t00030 - tRNA-Cys, at 1,937,056 to 1,937,129
_t00030
ECD_t00031: ECD_t00031 - tRNA-Gly, at 1,937,183 to 1,937,258
_t00031
ECD_01877: ECD_01877 - phosphatidylglycerophosphate synthetase, at 1,937,410 to 1,937,958
_01877
Position (kb)
1936
1937 Strain fitness (log2 ratio)
-1
0
1 at 1935.096 kb on + strand, within ECD_01875 at 1935.114 kb on + strand, within ECD_01875 at 1935.167 kb on + strand, within ECD_01875 at 1935.438 kb on + strand, within ECD_01875 at 1935.438 kb on + strand, within ECD_01875 at 1935.438 kb on + strand, within ECD_01875 at 1935.440 kb on + strand, within ECD_01875 at 1935.458 kb on + strand, within ECD_01875 at 1935.463 kb on + strand, within ECD_01875 at 1935.476 kb on + strand, within ECD_01875 at 1935.491 kb on + strand, within ECD_01875 at 1935.509 kb on + strand, within ECD_01875 at 1935.703 kb on + strand, within ECD_01875 at 1935.740 kb on + strand, within ECD_01875 at 1935.773 kb on + strand, within ECD_01875 at 1935.807 kb on + strand, within ECD_01875 at 1935.883 kb on + strand, within ECD_01875 at 1935.974 kb on + strand at 1936.401 kb on - strand, within ECD_01876 at 1936.516 kb on - strand, within ECD_01876 at 1936.516 kb on - strand, within ECD_01876 at 1936.578 kb on - strand, within ECD_01876 at 1936.798 kb on - strand at 1936.803 kb on - strand at 1936.904 kb on - strand at 1936.927 kb on - strand at 1936.941 kb on - strand at 1937.292 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 1,935,096 + ECD_01875 0.23 -1.7 1,935,114 + ECD_01875 0.24 +0.0 1,935,167 + ECD_01875 0.28 +0.5 1,935,438 + ECD_01875 0.51 +0.8 1,935,438 + ECD_01875 0.51 -0.1 1,935,438 + ECD_01875 0.51 -1.6 1,935,440 + ECD_01875 0.51 +0.6 1,935,458 + ECD_01875 0.52 +0.2 1,935,463 + ECD_01875 0.53 -0.4 1,935,476 + ECD_01875 0.54 -0.9 1,935,491 + ECD_01875 0.55 -1.7 1,935,509 + ECD_01875 0.57 -0.6 1,935,703 + ECD_01875 0.73 +0.6 1,935,740 + ECD_01875 0.76 -1.5 1,935,773 + ECD_01875 0.78 +1.7 1,935,807 + ECD_01875 0.81 +0.1 1,935,883 + ECD_01875 0.87 +0.5 1,935,974 + -0.7 1,936,401 - ECD_01876 0.46 -0.4 1,936,516 - ECD_01876 0.63 -1.5 1,936,516 - ECD_01876 0.63 -0.7 1,936,578 - ECD_01876 0.72 -0.8 1,936,798 - +0.5 1,936,803 - -0.5 1,936,904 - -0.7 1,936,927 - -0.5 1,936,941 - -0.8 1,937,292 - +0.8
Or see this region's nucleotide sequence