Strain Fitness in Escherichia coli BL21 around ECD_01798

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01795 and ECD_01796 are separated by 74 nucleotidesECD_01796 and ECD_01797 are separated by 158 nucleotidesECD_01797 and ECD_01798 are separated by 142 nucleotidesECD_01798 and ECD_01799 are separated by 176 nucleotides ECD_01795: ECD_01795 - putative inner membrane protein, at 1,853,987 to 1,854,274 _01795 ECD_01796: ECD_01796 - regulatory peptide for PhoPQ, feedback inhibition, at 1,854,349 to 1,854,492 _01796 ECD_01797: ECD_01797 - uncharacterized protein, at 1,854,651 to 1,854,890 _01797 ECD_01798: ECD_01798 - KDG regulon transcriptional repressor, at 1,855,033 to 1,855,824 _01798 ECD_01799: ECD_01799 - putative transporter, at 1,856,001 to 1,857,374 _01799 Position (kb) 1855 1856Strain fitness (log2 ratio) -2 -1 0 1 2at 1854.206 kb on - strand, within ECD_01795at 1854.225 kb on - strand, within ECD_01795at 1854.225 kb on - strand, within ECD_01795at 1854.305 kb on - strandat 1854.425 kb on - strand, within ECD_01796at 1854.512 kb on - strandat 1854.512 kb on - strandat 1854.517 kb on - strandat 1854.517 kb on - strandat 1854.517 kb on - strandat 1854.517 kb on - strandat 1854.519 kb on - strandat 1854.519 kb on - strandat 1854.519 kb on - strandat 1854.559 kb on - strandat 1854.774 kb on + strand, within ECD_01797at 1854.774 kb on + strand, within ECD_01797at 1855.104 kb on - strandat 1855.277 kb on - strand, within ECD_01798at 1855.318 kb on - strand, within ECD_01798at 1855.428 kb on - strand, within ECD_01798at 1855.443 kb on - strand, within ECD_01798at 1855.447 kb on - strand, within ECD_01798at 1855.447 kb on - strand, within ECD_01798at 1855.447 kb on - strand, within ECD_01798at 1855.474 kb on - strand, within ECD_01798at 1855.504 kb on - strand, within ECD_01798at 1855.670 kb on - strand, within ECD_01798at 1856.338 kb on + strand, within ECD_01799at 1856.654 kb on + strand, within ECD_01799

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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1,854,206 - ECD_01795 0.76 -1.5
1,854,225 - ECD_01795 0.83 +0.6
1,854,225 - ECD_01795 0.83 -0.3
1,854,305 - +0.9
1,854,425 - ECD_01796 0.53 +1.0
1,854,512 - +1.2
1,854,512 - +0.5
1,854,517 - +0.1
1,854,517 - +0.6
1,854,517 - +1.1
1,854,517 - -0.5
1,854,519 - -0.5
1,854,519 - +1.7
1,854,519 - +2.1
1,854,559 - +0.6
1,854,774 + ECD_01797 0.51 +0.0
1,854,774 + ECD_01797 0.51 +0.7
1,855,104 - +0.7
1,855,277 - ECD_01798 0.31 +0.2
1,855,318 - ECD_01798 0.36 -0.1
1,855,428 - ECD_01798 0.50 +0.1
1,855,443 - ECD_01798 0.52 -1.8
1,855,447 - ECD_01798 0.52 +0.9
1,855,447 - ECD_01798 0.52 -0.8
1,855,447 - ECD_01798 0.52 -0.6
1,855,474 - ECD_01798 0.56 -2.5
1,855,504 - ECD_01798 0.59 -0.2
1,855,670 - ECD_01798 0.80 -0.6
1,856,338 + ECD_01799 0.25 -0.4
1,856,654 + ECD_01799 0.48 +0.2

Or see this region's nucleotide sequence