Strain Fitness in Escherichia coli BL21 around ECD_01733

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01732 and ECD_01733 are separated by 4 nucleotidesECD_01733 and ECD_01734 are separated by 116 nucleotidesECD_01734 and ECD_01735 are separated by 160 nucleotides ECD_01732: ECD_01732 - DNA topoisomerase III, at 1,789,375 to 1,791,336 _01732 ECD_01733: ECD_01733 - selenophosphate synthase, at 1,791,341 to 1,792,384 _01733 ECD_01734: ECD_01734 - putative oxidoreductase, at 1,792,501 to 1,793,052 _01734 ECD_01735: ECD_01735 - protease IV (signal peptide peptidase), at 1,793,213 to 1,795,069 _01735 Position (kb) 1791 1792 1793Strain fitness (log2 ratio) -2 -1 0 1at 1790.530 kb on - strand, within ECD_01732at 1790.798 kb on + strand, within ECD_01732at 1790.799 kb on - strand, within ECD_01732at 1790.812 kb on - strand, within ECD_01732at 1791.081 kb on + strand, within ECD_01732at 1791.113 kb on - strand, within ECD_01732at 1791.325 kb on - strandat 1791.557 kb on - strand, within ECD_01733at 1791.830 kb on - strand, within ECD_01733at 1792.006 kb on - strand, within ECD_01733at 1792.006 kb on - strand, within ECD_01733at 1792.006 kb on - strand, within ECD_01733at 1792.354 kb on - strandat 1792.509 kb on - strandat 1792.548 kb on + strandat 1793.036 kb on - strandat 1793.210 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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1,790,530 - ECD_01732 0.59 -1.1
1,790,798 + ECD_01732 0.73 -0.6
1,790,799 - ECD_01732 0.73 -1.5
1,790,812 - ECD_01732 0.73 -1.6
1,791,081 + ECD_01732 0.87 -0.7
1,791,113 - ECD_01732 0.89 +0.6
1,791,325 - -1.7
1,791,557 - ECD_01733 0.21 -2.0
1,791,830 - ECD_01733 0.47 -0.2
1,792,006 - ECD_01733 0.64 -2.5
1,792,006 - ECD_01733 0.64 -1.5
1,792,006 - ECD_01733 0.64 -0.6
1,792,354 - -1.4
1,792,509 - -0.4
1,792,548 + -0.8
1,793,036 - +0.5
1,793,210 + -0.7

Or see this region's nucleotide sequence