Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01631 and ECD_01632 are separated by 290 nucleotides ECD_01632 and ECD_01633 are separated by 39 nucleotides ECD_01633 and ECD_01634 are separated by 214 nucleotides
ECD_01631: ECD_01631 - putative arabinose efflux transporter, at 1,685,180 to 1,686,391
_01631
ECD_01632: ECD_01632 - cyclopropane fatty acyl phospholipid synthase, SAM-dependent, at 1,686,682 to 1,687,830
_01632
ECD_01633: ECD_01633 - riboflavin synthase, alpha subunit, at 1,687,870 to 1,688,511
_01633
ECD_01634: ECD_01634 - multidrug efflux system transporter, at 1,688,726 to 1,690,099
_01634
Position (kb)
1686
1687
1688 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1685.904 kb on + strand, within ECD_01631 at 1685.909 kb on + strand, within ECD_01631 at 1686.119 kb on + strand, within ECD_01631 at 1686.492 kb on + strand at 1686.587 kb on + strand at 1686.865 kb on + strand, within ECD_01632 at 1687.231 kb on + strand, within ECD_01632 at 1687.231 kb on + strand, within ECD_01632 at 1687.231 kb on + strand, within ECD_01632 at 1687.466 kb on + strand, within ECD_01632 at 1687.635 kb on + strand, within ECD_01632 at 1687.635 kb on + strand, within ECD_01632 at 1687.638 kb on + strand, within ECD_01632 at 1687.638 kb on + strand, within ECD_01632 at 1687.722 kb on + strand at 1688.535 kb on - strand at 1688.700 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 1,685,904 + ECD_01631 0.60 -0.4 1,685,909 + ECD_01631 0.60 +2.2 1,686,119 + ECD_01631 0.77 +1.8 1,686,492 + -0.7 1,686,587 + +0.3 1,686,865 + ECD_01632 0.16 +0.4 1,687,231 + ECD_01632 0.48 -0.1 1,687,231 + ECD_01632 0.48 -1.8 1,687,231 + ECD_01632 0.48 -1.5 1,687,466 + ECD_01632 0.68 -0.5 1,687,635 + ECD_01632 0.83 -0.7 1,687,635 + ECD_01632 0.83 -1.0 1,687,638 + ECD_01632 0.83 -3.2 1,687,638 + ECD_01632 0.83 -0.1 1,687,722 + +1.7 1,688,535 - -0.3 1,688,700 + -0.5
Or see this region's nucleotide sequence