Strain Fitness in Escherichia coli BL21 around ECD_01632

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01631 and ECD_01632 are separated by 290 nucleotidesECD_01632 and ECD_01633 are separated by 39 nucleotidesECD_01633 and ECD_01634 are separated by 214 nucleotides ECD_01631: ECD_01631 - putative arabinose efflux transporter, at 1,685,180 to 1,686,391 _01631 ECD_01632: ECD_01632 - cyclopropane fatty acyl phospholipid synthase, SAM-dependent, at 1,686,682 to 1,687,830 _01632 ECD_01633: ECD_01633 - riboflavin synthase, alpha subunit, at 1,687,870 to 1,688,511 _01633 ECD_01634: ECD_01634 - multidrug efflux system transporter, at 1,688,726 to 1,690,099 _01634 Position (kb) 1686 1687 1688Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1685.904 kb on + strand, within ECD_01631at 1685.909 kb on + strand, within ECD_01631at 1686.119 kb on + strand, within ECD_01631at 1686.492 kb on + strandat 1686.587 kb on + strandat 1686.865 kb on + strand, within ECD_01632at 1687.231 kb on + strand, within ECD_01632at 1687.231 kb on + strand, within ECD_01632at 1687.231 kb on + strand, within ECD_01632at 1687.466 kb on + strand, within ECD_01632at 1687.635 kb on + strand, within ECD_01632at 1687.635 kb on + strand, within ECD_01632at 1687.638 kb on + strand, within ECD_01632at 1687.638 kb on + strand, within ECD_01632at 1687.722 kb on + strandat 1688.535 kb on - strandat 1688.700 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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1,685,904 + ECD_01631 0.60 -0.4
1,685,909 + ECD_01631 0.60 +2.2
1,686,119 + ECD_01631 0.77 +1.8
1,686,492 + -0.7
1,686,587 + +0.3
1,686,865 + ECD_01632 0.16 +0.4
1,687,231 + ECD_01632 0.48 -0.1
1,687,231 + ECD_01632 0.48 -1.8
1,687,231 + ECD_01632 0.48 -1.5
1,687,466 + ECD_01632 0.68 -0.5
1,687,635 + ECD_01632 0.83 -0.7
1,687,635 + ECD_01632 0.83 -1.0
1,687,638 + ECD_01632 0.83 -3.2
1,687,638 + ECD_01632 0.83 -0.1
1,687,722 + +1.7
1,688,535 - -0.3
1,688,700 + -0.5

Or see this region's nucleotide sequence