Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01608 and ECD_01609 are separated by 58 nucleotides ECD_01609 and ECD_01610 are separated by 97 nucleotides ECD_01610 and ECD_01611 are separated by 273 nucleotides ECD_01611 and ECD_01612 are separated by 46 nucleotides
ECD_01608: ECD_01608 - pyridoxine 5'-phosphate oxidase, at 1,662,547 to 1,663,203
_01608
ECD_01609: ECD_01609 - inhibitor of c-type lysozyme, membrane-bound; putative lipoprotein, at 1,663,262 to 1,663,591
_01609
ECD_01610: ECD_01610 - anhydro-N-acetylmuramic acid kinase, at 1,663,689 to 1,664,798
_01610
ECD_01611: ECD_01611 - outer membrane lipoprotein, at 1,665,072 to 1,665,539
_01611
ECD_01612: ECD_01612 - global transcriptional regulator, at 1,665,586 to 1,666,020
_01612
Position (kb)
1663
1664
1665 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1663.679 kb on - strand at 1663.921 kb on - strand, within ECD_01610 at 1664.056 kb on + strand, within ECD_01610 at 1664.057 kb on - strand, within ECD_01610 at 1664.057 kb on - strand, within ECD_01610 at 1664.065 kb on + strand, within ECD_01610 at 1664.141 kb on + strand, within ECD_01610 at 1664.527 kb on - strand, within ECD_01610 at 1664.527 kb on - strand, within ECD_01610 at 1664.527 kb on - strand, within ECD_01610 at 1664.529 kb on - strand, within ECD_01610 at 1664.772 kb on - strand at 1664.890 kb on - strand at 1664.890 kb on - strand at 1664.901 kb on - strand at 1665.006 kb on + strand at 1665.006 kb on + strand at 1665.006 kb on + strand at 1665.006 kb on + strand at 1665.006 kb on + strand at 1665.015 kb on + strand at 1665.015 kb on + strand at 1665.103 kb on + strand at 1665.103 kb on + strand at 1665.103 kb on + strand at 1665.156 kb on + strand, within ECD_01611 at 1665.181 kb on + strand, within ECD_01611 at 1665.181 kb on + strand, within ECD_01611 at 1665.214 kb on + strand, within ECD_01611 at 1665.214 kb on + strand, within ECD_01611 at 1665.299 kb on + strand, within ECD_01611 at 1665.299 kb on + strand, within ECD_01611 at 1665.299 kb on + strand, within ECD_01611 at 1665.376 kb on + strand, within ECD_01611 at 1665.434 kb on + strand, within ECD_01611 at 1665.437 kb on + strand, within ECD_01611 at 1665.437 kb on + strand, within ECD_01611 at 1665.537 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 1,663,679 - +0.2 1,663,921 - ECD_01610 0.21 -2.9 1,664,056 + ECD_01610 0.33 +1.8 1,664,057 - ECD_01610 0.33 -3.4 1,664,057 - ECD_01610 0.33 +0.7 1,664,065 + ECD_01610 0.34 -1.6 1,664,141 + ECD_01610 0.41 +0.2 1,664,527 - ECD_01610 0.75 -1.0 1,664,527 - ECD_01610 0.75 -0.8 1,664,527 - ECD_01610 0.75 -2.4 1,664,529 - ECD_01610 0.76 +0.1 1,664,772 - +0.7 1,664,890 - +0.1 1,664,890 - +0.9 1,664,901 - -1.1 1,665,006 + -0.1 1,665,006 + -0.5 1,665,006 + -1.8 1,665,006 + -1.4 1,665,006 + -0.7 1,665,015 + -0.2 1,665,015 + +0.7 1,665,103 + +0.4 1,665,103 + -1.6 1,665,103 + +1.0 1,665,156 + ECD_01611 0.18 -0.6 1,665,181 + ECD_01611 0.23 -1.1 1,665,181 + ECD_01611 0.23 -0.2 1,665,214 + ECD_01611 0.30 +0.0 1,665,214 + ECD_01611 0.30 +0.7 1,665,299 + ECD_01611 0.49 -0.9 1,665,299 + ECD_01611 0.49 -0.5 1,665,299 + ECD_01611 0.49 -2.3 1,665,376 + ECD_01611 0.65 +1.4 1,665,434 + ECD_01611 0.77 +0.6 1,665,437 + ECD_01611 0.78 +0.4 1,665,437 + ECD_01611 0.78 +1.0 1,665,537 + +0.6
Or see this region's nucleotide sequence