Strain Fitness in Escherichia coli BL21 around ECD_01610

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01608 and ECD_01609 are separated by 58 nucleotidesECD_01609 and ECD_01610 are separated by 97 nucleotidesECD_01610 and ECD_01611 are separated by 273 nucleotidesECD_01611 and ECD_01612 are separated by 46 nucleotides ECD_01608: ECD_01608 - pyridoxine 5'-phosphate oxidase, at 1,662,547 to 1,663,203 _01608 ECD_01609: ECD_01609 - inhibitor of c-type lysozyme, membrane-bound; putative lipoprotein, at 1,663,262 to 1,663,591 _01609 ECD_01610: ECD_01610 - anhydro-N-acetylmuramic acid kinase, at 1,663,689 to 1,664,798 _01610 ECD_01611: ECD_01611 - outer membrane lipoprotein, at 1,665,072 to 1,665,539 _01611 ECD_01612: ECD_01612 - global transcriptional regulator, at 1,665,586 to 1,666,020 _01612 Position (kb) 1663 1664 1665Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1663.679 kb on - strandat 1663.921 kb on - strand, within ECD_01610at 1664.056 kb on + strand, within ECD_01610at 1664.057 kb on - strand, within ECD_01610at 1664.057 kb on - strand, within ECD_01610at 1664.065 kb on + strand, within ECD_01610at 1664.141 kb on + strand, within ECD_01610at 1664.527 kb on - strand, within ECD_01610at 1664.527 kb on - strand, within ECD_01610at 1664.527 kb on - strand, within ECD_01610at 1664.529 kb on - strand, within ECD_01610at 1664.772 kb on - strandat 1664.890 kb on - strandat 1664.890 kb on - strandat 1664.901 kb on - strandat 1665.006 kb on + strandat 1665.006 kb on + strandat 1665.006 kb on + strandat 1665.006 kb on + strandat 1665.006 kb on + strandat 1665.015 kb on + strandat 1665.015 kb on + strandat 1665.103 kb on + strandat 1665.103 kb on + strandat 1665.103 kb on + strandat 1665.156 kb on + strand, within ECD_01611at 1665.181 kb on + strand, within ECD_01611at 1665.181 kb on + strand, within ECD_01611at 1665.214 kb on + strand, within ECD_01611at 1665.214 kb on + strand, within ECD_01611at 1665.299 kb on + strand, within ECD_01611at 1665.299 kb on + strand, within ECD_01611at 1665.299 kb on + strand, within ECD_01611at 1665.376 kb on + strand, within ECD_01611at 1665.434 kb on + strand, within ECD_01611at 1665.437 kb on + strand, within ECD_01611at 1665.437 kb on + strand, within ECD_01611at 1665.537 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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1,663,679 - +0.2
1,663,921 - ECD_01610 0.21 -2.9
1,664,056 + ECD_01610 0.33 +1.8
1,664,057 - ECD_01610 0.33 -3.4
1,664,057 - ECD_01610 0.33 +0.7
1,664,065 + ECD_01610 0.34 -1.6
1,664,141 + ECD_01610 0.41 +0.2
1,664,527 - ECD_01610 0.75 -1.0
1,664,527 - ECD_01610 0.75 -0.8
1,664,527 - ECD_01610 0.75 -2.4
1,664,529 - ECD_01610 0.76 +0.1
1,664,772 - +0.7
1,664,890 - +0.1
1,664,890 - +0.9
1,664,901 - -1.1
1,665,006 + -0.1
1,665,006 + -0.5
1,665,006 + -1.8
1,665,006 + -1.4
1,665,006 + -0.7
1,665,015 + -0.2
1,665,015 + +0.7
1,665,103 + +0.4
1,665,103 + -1.6
1,665,103 + +1.0
1,665,156 + ECD_01611 0.18 -0.6
1,665,181 + ECD_01611 0.23 -1.1
1,665,181 + ECD_01611 0.23 -0.2
1,665,214 + ECD_01611 0.30 +0.0
1,665,214 + ECD_01611 0.30 +0.7
1,665,299 + ECD_01611 0.49 -0.9
1,665,299 + ECD_01611 0.49 -0.5
1,665,299 + ECD_01611 0.49 -2.3
1,665,376 + ECD_01611 0.65 +1.4
1,665,434 + ECD_01611 0.77 +0.6
1,665,437 + ECD_01611 0.78 +0.4
1,665,437 + ECD_01611 0.78 +1.0
1,665,537 + +0.6

Or see this region's nucleotide sequence