Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01592 and ECD_01593 are separated by 33 nucleotides ECD_01593 and ECD_01594 are separated by 242 nucleotides ECD_01594 and ECD_01595 are separated by 272 nucleotides ECD_01595 and ECD_01596 are separated by 85 nucleotides
ECD_01592: ECD_01592 - adenosine deaminase, at 1,647,429 to 1,648,430
_01592
ECD_01593: ECD_01593 - putative oxidoreductase, at 1,648,464 to 1,649,504
_01593
ECD_01594: ECD_01594 - beta-lactam resistance membrane protein; divisome-associated protein, at 1,649,747 to 1,649,872
_01594
ECD_01595: ECD_01595 - nucleoid-associated oriC-binding protein; H-NS and StpA stabilizing factor, at 1,650,145 to 1,650,360
_01595
ECD_01596: ECD_01596 - DUF2569 family inner membrane protein, at 1,650,446 to 1,650,886
_01596
Position (kb) 1648
1649
1650 Strain fitness (log2 ratio) -1
0
1 at 1648.007 kb on + strand, within ECD_01592 at 1648.691 kb on - strand, within ECD_01593 at 1648.792 kb on + strand, within ECD_01593 at 1648.975 kb on - strand, within ECD_01593 at 1649.526 kb on - strand at 1649.526 kb on - strand at 1649.745 kb on + strand at 1649.831 kb on + strand, within ECD_01594 at 1649.870 kb on + strand at 1649.870 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 1,648,007 + ECD_01592 0.58 -0.6 1,648,691 - ECD_01593 0.22 -0.6 1,648,792 + ECD_01593 0.32 -0.8 1,648,975 - ECD_01593 0.49 -1.4 1,649,526 - -0.8 1,649,526 - -0.7 1,649,745 + +0.8 1,649,831 + ECD_01594 0.67 +0.4 1,649,870 + +0.2 1,649,870 + +1.3
Or see this region's nucleotide sequence