Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01575 and ECD_01576 overlap by 4 nucleotides ECD_01576 and ECD_01577 are separated by 128 nucleotides ECD_01577 and ECD_01578 are separated by 3 nucleotides
ECD_01575: ECD_01575 - dihydromonapterin reductase, NADPH-dependent; dihydrofolate reductase isozyme, at 1,626,173 to 1,626,895
_01575
ECD_01576: ECD_01576 - GlpM family inner membrane protein, at 1,626,892 to 1,627,227
_01576
ECD_01577: ECD_01577 - response regulator of RstAB two-component system, at 1,627,356 to 1,628,075
_01577
ECD_01578: ECD_01578 - sensory histidine kinase of RstAB two-component system, at 1,628,079 to 1,629,380
_01578
Position (kb) 1627
1628
1629 Strain fitness (log2 ratio) -2
-1
0
1 at 1626.541 kb on - strand, within ECD_01575 at 1626.915 kb on + strand at 1627.045 kb on - strand, within ECD_01576 at 1627.369 kb on + strand at 1627.649 kb on + strand, within ECD_01577 at 1627.649 kb on + strand, within ECD_01577 at 1628.510 kb on + strand, within ECD_01578 at 1628.572 kb on + strand, within ECD_01578 at 1628.624 kb on + strand, within ECD_01578
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 1,626,541 - ECD_01575 0.51 -1.6 1,626,915 + +0.3 1,627,045 - ECD_01576 0.46 -1.0 1,627,369 + +0.4 1,627,649 + ECD_01577 0.41 -1.3 1,627,649 + ECD_01577 0.41 -2.0 1,628,510 + ECD_01578 0.33 -0.8 1,628,572 + ECD_01578 0.38 -1.0 1,628,624 + ECD_01578 0.42 +0.2
Or see this region's nucleotide sequence