Strain Fitness in Escherichia coli BL21 around ECD_01501

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01499 and ECD_01500 are separated by 176 nucleotidesECD_01500 and ECD_01501 are separated by 35 nucleotidesECD_01501 and ECD_01502 are separated by 88 nucleotides ECD_01499: ECD_01499 - transcriptional repressor for rspAB, at 1,577,648 to 1,578,334 _01499 ECD_01500: ECD_01500 - selenoprotein, function unknown, at 1,578,511 to 1,578,714 _01500 ECD_01501: ECD_01501 - putative NAD-dependent D-mannonate oxidoreductase, at 1,578,750 to 1,580,210 _01501 ECD_01502: ECD_01502 - putative transporter, at 1,580,299 to 1,581,582 _01502 Position (kb) 1578 1579 1580 1581Strain fitness (log2 ratio) -1 0 1 2at 1577.867 kb on + strand, within ECD_01499at 1578.452 kb on + strandat 1579.515 kb on - strand, within ECD_01501at 1579.572 kb on - strand, within ECD_01501at 1580.075 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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1,577,867 + ECD_01499 0.32 -0.1
1,578,452 + +1.8
1,579,515 - ECD_01501 0.52 -1.3
1,579,572 - ECD_01501 0.56 +1.8
1,580,075 + +0.7

Or see this region's nucleotide sequence