Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01423 and ECD_01424 overlap by 4 nucleotides ECD_01424 and ECD_01425 overlap by 1 nucleotides ECD_01425 and ECD_01426 overlap by 4 nucleotides
ECD_01423: ECD_01423 - nitrate reductase 2 (NRZ), gamma subunit, at 1,491,618 to 1,492,298
_01423
ECD_01424: ECD_01424 - nitrate reductase 2 (NRZ), delta subunit (assembly subunit), at 1,492,295 to 1,492,990
_01424
ECD_01425: ECD_01425 - nitrate reductase 2 (NRZ), beta subunit, at 1,492,990 to 1,494,534
_01425
ECD_01426: ECD_01426 - nitrate reductase 2 (NRZ), alpha subunit, at 1,494,531 to 1,498,271
_01426
Position (kb)
1492
1493
1494
1495 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1492.670 kb on + strand, within ECD_01424 at 1492.674 kb on + strand, within ECD_01424 at 1493.047 kb on - strand at 1493.181 kb on - strand, within ECD_01425 at 1493.205 kb on - strand, within ECD_01425 at 1493.291 kb on + strand, within ECD_01425 at 1493.383 kb on - strand, within ECD_01425 at 1493.547 kb on - strand, within ECD_01425 at 1494.178 kb on - strand, within ECD_01425 at 1494.787 kb on + strand at 1494.787 kb on + strand at 1494.971 kb on - strand, within ECD_01426 at 1495.138 kb on + strand, within ECD_01426 at 1495.208 kb on - strand, within ECD_01426
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 1,492,670 + ECD_01424 0.54 -0.1 1,492,674 + ECD_01424 0.54 -0.4 1,493,047 - -0.1 1,493,181 - ECD_01425 0.12 +0.0 1,493,205 - ECD_01425 0.14 -2.2 1,493,291 + ECD_01425 0.19 -1.3 1,493,383 - ECD_01425 0.25 +0.8 1,493,547 - ECD_01425 0.36 -1.3 1,494,178 - ECD_01425 0.77 -0.7 1,494,787 + +1.2 1,494,787 + -0.5 1,494,971 - ECD_01426 0.12 -1.4 1,495,138 + ECD_01426 0.16 +2.5 1,495,208 - ECD_01426 0.18 -0.3
Or see this region's nucleotide sequence