Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01390 and ECD_01391 are separated by 39 nucleotides ECD_01391 and ECD_01392 are separated by 91 nucleotides ECD_01392 and ECD_01393 are separated by 72 nucleotides
ECD_01390: ECD_01390 - IS609 transposase B, at 1,457,780 to 1,458,928
_01390
ECD_01391: ECD_01391 - BenE family inner membrane putative transporter, at 1,458,968 to 1,460,143
_01391
ECD_01392: ECD_01392 - putative DNA-binding transcriptional regulator, at 1,460,235 to 1,460,771
_01392
ECD_01393: ECD_01393 - putative peptidase, at 1,460,844 to 1,462,805
_01393
Position (kb) 1458
1459
1460
1461 Strain fitness (log2 ratio) -1
0
1 at 1458.465 kb on - strand, within ECD_01390 at 1458.511 kb on - strand, within ECD_01390 at 1458.656 kb on + strand, within ECD_01390 at 1458.706 kb on + strand, within ECD_01390 at 1458.793 kb on + strand, within ECD_01390 at 1458.793 kb on + strand, within ECD_01390 at 1459.542 kb on + strand, within ECD_01391 at 1459.543 kb on - strand, within ECD_01391 at 1459.685 kb on - strand, within ECD_01391 at 1459.685 kb on - strand, within ECD_01391 at 1459.700 kb on - strand, within ECD_01391 at 1459.956 kb on - strand, within ECD_01391 at 1460.270 kb on + strand at 1460.663 kb on + strand, within ECD_01392 at 1460.664 kb on - strand, within ECD_01392 at 1461.098 kb on + strand, within ECD_01393
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 1,458,465 - ECD_01390 0.60 -1.5 1,458,511 - ECD_01390 0.64 -0.2 1,458,656 + ECD_01390 0.76 +0.2 1,458,706 + ECD_01390 0.81 -0.6 1,458,793 + ECD_01390 0.88 +0.6 1,458,793 + ECD_01390 0.88 -0.3 1,459,542 + ECD_01391 0.49 +1.0 1,459,543 - ECD_01391 0.49 +0.9 1,459,685 - ECD_01391 0.61 -0.8 1,459,685 - ECD_01391 0.61 +1.0 1,459,700 - ECD_01391 0.62 +1.3 1,459,956 - ECD_01391 0.84 +1.2 1,460,270 + -0.3 1,460,663 + ECD_01392 0.80 -0.4 1,460,664 - ECD_01392 0.80 -0.6 1,461,098 + ECD_01393 0.13 +0.8
Or see this region's nucleotide sequence