Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01348 and ECD_01349 are separated by 366 nucleotides ECD_01349 and ECD_01350 are separated by 273 nucleotides ECD_01350 and ECD_01351 overlap by 4 nucleotides
ECD_01348: ECD_01348 - outer membrane pore protein N, non-specific, at 1,411,319 to 1,412,452
_01348
ECD_01349: ECD_01349 - pyruvate-flavodoxin oxidoreductase, at 1,412,819 to 1,416,343
_01349
ECD_01350: ECD_01350 - DUF333 family putative lipoprotein, at 1,416,617 to 1,416,883
_01350
ECD_01351: ECD_01351 - heat-inducible lipoprotein involved in novobiocin resistance, at 1,416,880 to 1,417,302
_01351
Position (kb)
1412
1413
1414
1415
1416
1417 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1413.710 kb on - strand, within ECD_01349 at 1414.036 kb on + strand, within ECD_01349 at 1414.154 kb on - strand, within ECD_01349 at 1414.267 kb on + strand, within ECD_01349 at 1416.087 kb on - strand at 1416.335 kb on - strand at 1416.335 kb on - strand at 1416.354 kb on + strand at 1416.355 kb on - strand at 1416.355 kb on - strand at 1416.399 kb on - strand at 1416.576 kb on + strand at 1417.250 kb on - strand, within ECD_01351
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 1,413,710 - ECD_01349 0.25 -0.8 1,414,036 + ECD_01349 0.35 +0.6 1,414,154 - ECD_01349 0.38 +1.7 1,414,267 + ECD_01349 0.41 +1.1 1,416,087 - -1.9 1,416,335 - +0.6 1,416,335 - +2.2 1,416,354 + +0.6 1,416,355 - +0.0 1,416,355 - -0.3 1,416,399 - -0.7 1,416,576 + -2.3 1,417,250 - ECD_01351 0.87 +0.7
Or see this region's nucleotide sequence