Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01292 and ECD_01293 overlap by 4 nucleotides ECD_01293 and ECD_01294 overlap by 4 nucleotides ECD_01294 and ECD_01295 are separated by 13 nucleotides
ECD_01292: ECD_01292 - putative NADH-binding oxidoreductase, at 1,363,198 to 1,364,253
_01292
ECD_01293: ECD_01293 - putative family 65 glycosyl hydrolase, at 1,364,250 to 1,366,517
_01293
ECD_01294: ECD_01294 - beta-phosphoglucomutase, at 1,366,514 to 1,367,173
_01294
ECD_01295: ECD_01295 - putative sugar transport protein, at 1,367,187 to 1,368,269
_01295
Position (kb)
1364
1365
1366
1367 Strain fitness (log2 ratio)
-2
-1
0
1 at 1363.282 kb on + strand at 1363.657 kb on + strand, within ECD_01292 at 1363.658 kb on - strand, within ECD_01292 at 1363.764 kb on + strand, within ECD_01292 at 1363.764 kb on + strand, within ECD_01292 at 1363.783 kb on + strand, within ECD_01292 at 1363.783 kb on + strand, within ECD_01292 at 1363.783 kb on + strand, within ECD_01292 at 1363.888 kb on + strand, within ECD_01292 at 1364.043 kb on + strand, within ECD_01292 at 1364.043 kb on + strand, within ECD_01292 at 1364.144 kb on + strand, within ECD_01292 at 1364.308 kb on - strand at 1364.790 kb on + strand, within ECD_01293 at 1364.865 kb on + strand, within ECD_01293 at 1364.865 kb on + strand, within ECD_01293 at 1364.866 kb on - strand, within ECD_01293 at 1364.897 kb on + strand, within ECD_01293 at 1364.897 kb on + strand, within ECD_01293 at 1364.897 kb on + strand, within ECD_01293 at 1365.039 kb on + strand, within ECD_01293 at 1366.078 kb on + strand, within ECD_01293 at 1366.185 kb on - strand, within ECD_01293 at 1366.428 kb on - strand at 1366.551 kb on + strand at 1366.712 kb on - strand, within ECD_01294 at 1367.169 kb on + strand at 1367.172 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 1,363,282 + +0.6 1,363,657 + ECD_01292 0.43 +1.1 1,363,658 - ECD_01292 0.44 +0.2 1,363,764 + ECD_01292 0.54 +0.3 1,363,764 + ECD_01292 0.54 -1.2 1,363,783 + ECD_01292 0.55 +0.4 1,363,783 + ECD_01292 0.55 +1.3 1,363,783 + ECD_01292 0.55 +0.4 1,363,888 + ECD_01292 0.65 -0.2 1,364,043 + ECD_01292 0.80 -1.2 1,364,043 + ECD_01292 0.80 -1.5 1,364,144 + ECD_01292 0.90 +1.0 1,364,308 - -1.0 1,364,790 + ECD_01293 0.24 +0.1 1,364,865 + ECD_01293 0.27 -0.0 1,364,865 + ECD_01293 0.27 -1.8 1,364,866 - ECD_01293 0.27 +0.4 1,364,897 + ECD_01293 0.29 +0.5 1,364,897 + ECD_01293 0.29 +1.6 1,364,897 + ECD_01293 0.29 +0.2 1,365,039 + ECD_01293 0.35 -0.6 1,366,078 + ECD_01293 0.81 +0.2 1,366,185 - ECD_01293 0.85 -1.4 1,366,428 - -1.8 1,366,551 + -1.2 1,366,712 - ECD_01294 0.30 +0.6 1,367,169 + +0.5 1,367,172 - -0.6
Or see this region's nucleotide sequence