Strain Fitness in Escherichia coli BL21 around ECD_01293

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01292 and ECD_01293 overlap by 4 nucleotidesECD_01293 and ECD_01294 overlap by 4 nucleotidesECD_01294 and ECD_01295 are separated by 13 nucleotides ECD_01292: ECD_01292 - putative NADH-binding oxidoreductase, at 1,363,198 to 1,364,253 _01292 ECD_01293: ECD_01293 - putative family 65 glycosyl hydrolase, at 1,364,250 to 1,366,517 _01293 ECD_01294: ECD_01294 - beta-phosphoglucomutase, at 1,366,514 to 1,367,173 _01294 ECD_01295: ECD_01295 - putative sugar transport protein, at 1,367,187 to 1,368,269 _01295 Position (kb) 1364 1365 1366 1367Strain fitness (log2 ratio) -2 -1 0 1at 1363.282 kb on + strandat 1363.657 kb on + strand, within ECD_01292at 1363.658 kb on - strand, within ECD_01292at 1363.764 kb on + strand, within ECD_01292at 1363.764 kb on + strand, within ECD_01292at 1363.783 kb on + strand, within ECD_01292at 1363.783 kb on + strand, within ECD_01292at 1363.783 kb on + strand, within ECD_01292at 1363.888 kb on + strand, within ECD_01292at 1364.043 kb on + strand, within ECD_01292at 1364.043 kb on + strand, within ECD_01292at 1364.144 kb on + strand, within ECD_01292at 1364.308 kb on - strandat 1364.790 kb on + strand, within ECD_01293at 1364.865 kb on + strand, within ECD_01293at 1364.865 kb on + strand, within ECD_01293at 1364.866 kb on - strand, within ECD_01293at 1364.897 kb on + strand, within ECD_01293at 1364.897 kb on + strand, within ECD_01293at 1364.897 kb on + strand, within ECD_01293at 1365.039 kb on + strand, within ECD_01293at 1366.078 kb on + strand, within ECD_01293at 1366.185 kb on - strand, within ECD_01293at 1366.428 kb on - strandat 1366.551 kb on + strandat 1366.712 kb on - strand, within ECD_01294at 1367.169 kb on + strandat 1367.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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1,363,282 + +0.6
1,363,657 + ECD_01292 0.43 +1.2
1,363,658 - ECD_01292 0.44 +0.2
1,363,764 + ECD_01292 0.54 +0.4
1,363,764 + ECD_01292 0.54 -1.2
1,363,783 + ECD_01292 0.55 +0.5
1,363,783 + ECD_01292 0.55 +1.4
1,363,783 + ECD_01292 0.55 +0.4
1,363,888 + ECD_01292 0.65 -0.2
1,364,043 + ECD_01292 0.80 -1.2
1,364,043 + ECD_01292 0.80 -1.5
1,364,144 + ECD_01292 0.90 +1.0
1,364,308 - -0.9
1,364,790 + ECD_01293 0.24 +0.1
1,364,865 + ECD_01293 0.27 -0.0
1,364,865 + ECD_01293 0.27 -1.8
1,364,866 - ECD_01293 0.27 +0.4
1,364,897 + ECD_01293 0.29 +0.5
1,364,897 + ECD_01293 0.29 +1.6
1,364,897 + ECD_01293 0.29 +0.2
1,365,039 + ECD_01293 0.35 -0.6
1,366,078 + ECD_01293 0.81 +0.2
1,366,185 - ECD_01293 0.85 -1.4
1,366,428 - -1.8
1,366,551 + -1.2
1,366,712 - ECD_01294 0.30 +0.6
1,367,169 + +0.5
1,367,172 - -0.6

Or see this region's nucleotide sequence