Strain Fitness in Escherichia coli BL21 around ECD_01288

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01287 and ECD_01288 are separated by 20 nucleotidesECD_01288 and ECD_01289 overlap by 14 nucleotidesECD_01289 and ECD_01290 are separated by 30 nucleotides ECD_01287: ECD_01287 - putative ABC sugar transporter periplasmic binding protein, at 1,358,275 to 1,359,567 _01287 ECD_01288: ECD_01288 - putative sugar ABC transporter permease, at 1,359,588 to 1,360,469 _01288 ECD_01289: ECD_01289 - putative sugar ABC transporter permease, at 1,360,456 to 1,361,298 _01289 ECD_01290: ECD_01290 - putative Zn-dependent NAD(P)-binding oxidoreductase, at 1,361,329 to 1,362,381 _01290 Position (kb) 1359 1360 1361Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1359.067 kb on + strand, within ECD_01287at 1359.076 kb on + strand, within ECD_01287at 1359.077 kb on - strand, within ECD_01287at 1359.157 kb on + strand, within ECD_01287at 1359.483 kb on + strandat 1359.516 kb on + strandat 1359.765 kb on + strand, within ECD_01288at 1359.766 kb on - strand, within ECD_01288at 1359.766 kb on - strand, within ECD_01288at 1360.032 kb on + strand, within ECD_01288at 1360.284 kb on + strand, within ECD_01288at 1360.336 kb on + strand, within ECD_01288at 1360.412 kb on + strandat 1360.808 kb on - strand, within ECD_01289at 1360.809 kb on + strand, within ECD_01289at 1360.810 kb on - strand, within ECD_01289at 1361.179 kb on + strand, within ECD_01289at 1361.239 kb on + strandat 1361.314 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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1,359,067 + ECD_01287 0.61 +0.9
1,359,076 + ECD_01287 0.62 +0.9
1,359,077 - ECD_01287 0.62 +0.5
1,359,157 + ECD_01287 0.68 +0.0
1,359,483 + +0.1
1,359,516 + -1.2
1,359,765 + ECD_01288 0.20 -1.9
1,359,766 - ECD_01288 0.20 -0.9
1,359,766 - ECD_01288 0.20 +1.6
1,360,032 + ECD_01288 0.50 -1.5
1,360,284 + ECD_01288 0.79 -1.6
1,360,336 + ECD_01288 0.85 -0.0
1,360,412 + -0.9
1,360,808 - ECD_01289 0.42 +1.2
1,360,809 + ECD_01289 0.42 -0.3
1,360,810 - ECD_01289 0.42 +3.2
1,361,179 + ECD_01289 0.86 -0.2
1,361,239 + -0.8
1,361,314 + -1.1

Or see this region's nucleotide sequence