Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01224 and ECD_01225 are separated by 299 nucleotides ECD_01225 and ECD_01226 are separated by 223 nucleotides ECD_01226 and ECD_01227 are separated by 39 nucleotides
ECD_01224: ECD_01224 - voltage-gated potassium channel, at 1,294,608 to 1,295,861
_01224
ECD_01225: ECD_01225 - putative DGPF domain-containing enzyme, at 1,296,161 to 1,296,457
_01225
ECD_01226: ECD_01226 - membrane spanning protein in TonB-ExbB-ExbD transport complex, at 1,296,681 to 1,297,400
_01226
ECD_01227: ECD_01227 - acyl-CoA esterase, at 1,297,440 to 1,297,838
_01227
Position (kb) 1296
1297 Strain fitness (log2 ratio) -1
0
1 at 1296.039 kb on + strand at 1296.220 kb on - strand, within ECD_01225 at 1296.369 kb on - strand, within ECD_01225 at 1296.422 kb on - strand, within ECD_01225 at 1296.492 kb on - strand at 1296.765 kb on + strand, within ECD_01226 at 1296.767 kb on + strand, within ECD_01226 at 1296.886 kb on + strand, within ECD_01226 at 1297.214 kb on + strand, within ECD_01226
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 1,296,039 + +0.5 1,296,220 - ECD_01225 0.20 -0.3 1,296,369 - ECD_01225 0.70 -0.9 1,296,422 - ECD_01225 0.88 -1.0 1,296,492 - +0.6 1,296,765 + ECD_01226 0.12 -0.1 1,296,767 + ECD_01226 0.12 -0.1 1,296,886 + ECD_01226 0.28 +0.2 1,297,214 + ECD_01226 0.74 +1.6
Or see this region's nucleotide sequence