Strain Fitness in Escherichia coli BL21 around ECD_01217

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01216 and ECD_01217 are separated by 737 nucleotidesECD_01217 and ECD_01218 are separated by 85 nucleotides ECD_01216: ECD_01216 - UPF0056 family inner membrane protein, at 1,285,389 to 1,286,036 _01216 ECD_01217: ECD_01217 - oligopeptide ABC transporter periplasmic binding protein, at 1,286,774 to 1,288,405 _01217 ECD_01218: ECD_01218 - oligopeptide ABC transporter permease, at 1,288,491 to 1,289,411 _01218 Position (kb) 1286 1287 1288 1289Strain fitness (log2 ratio) -2 -1 0 1 2at 1285.829 kb on + strand, within ECD_01216at 1285.991 kb on + strandat 1286.610 kb on + strandat 1286.610 kb on + strandat 1286.610 kb on + strandat 1286.658 kb on + strandat 1286.658 kb on + strandat 1286.658 kb on + strandat 1286.658 kb on + strandat 1286.658 kb on + strandat 1286.658 kb on + strandat 1286.750 kb on + strandat 1286.802 kb on + strandat 1286.859 kb on + strandat 1286.859 kb on + strandat 1286.962 kb on + strand, within ECD_01217at 1286.962 kb on + strand, within ECD_01217at 1286.965 kb on + strand, within ECD_01217at 1287.049 kb on + strand, within ECD_01217at 1287.134 kb on + strand, within ECD_01217at 1287.136 kb on + strand, within ECD_01217at 1287.282 kb on + strand, within ECD_01217at 1287.319 kb on + strand, within ECD_01217at 1287.403 kb on + strand, within ECD_01217at 1287.479 kb on + strand, within ECD_01217at 1287.519 kb on - strand, within ECD_01217at 1287.519 kb on - strand, within ECD_01217at 1287.671 kb on + strand, within ECD_01217at 1287.944 kb on + strand, within ECD_01217at 1287.946 kb on + strand, within ECD_01217at 1288.174 kb on + strand, within ECD_01217at 1288.174 kb on + strand, within ECD_01217at 1288.174 kb on + strand, within ECD_01217at 1288.298 kb on + strandat 1288.301 kb on + strandat 1288.369 kb on + strandat 1288.369 kb on + strandat 1288.412 kb on + strandat 1288.412 kb on + strandat 1288.547 kb on + strandat 1288.565 kb on + strandat 1289.152 kb on + strand, within ECD_01218at 1289.164 kb on + strand, within ECD_01218at 1289.231 kb on + strand, within ECD_01218at 1289.317 kb on + strand, within ECD_01218at 1289.377 kb on + strandat 1289.377 kb on + strandat 1289.377 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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1,285,829 + ECD_01216 0.68 -0.4
1,285,991 + -1.0
1,286,610 + +0.2
1,286,610 + +0.5
1,286,610 + +0.0
1,286,658 + +1.8
1,286,658 + -0.4
1,286,658 + -1.8
1,286,658 + +0.6
1,286,658 + +0.6
1,286,658 + +1.3
1,286,750 + -0.3
1,286,802 + -0.0
1,286,859 + +1.2
1,286,859 + +0.1
1,286,962 + ECD_01217 0.12 +1.3
1,286,962 + ECD_01217 0.12 +0.4
1,286,965 + ECD_01217 0.12 -0.5
1,287,049 + ECD_01217 0.17 +0.9
1,287,134 + ECD_01217 0.22 +0.5
1,287,136 + ECD_01217 0.22 +0.9
1,287,282 + ECD_01217 0.31 -0.1
1,287,319 + ECD_01217 0.33 +0.0
1,287,403 + ECD_01217 0.39 +1.8
1,287,479 + ECD_01217 0.43 +2.7
1,287,519 - ECD_01217 0.46 +1.3
1,287,519 - ECD_01217 0.46 +1.2
1,287,671 + ECD_01217 0.55 -1.3
1,287,944 + ECD_01217 0.72 +1.9
1,287,946 + ECD_01217 0.72 -0.4
1,288,174 + ECD_01217 0.86 +0.5
1,288,174 + ECD_01217 0.86 -1.7
1,288,174 + ECD_01217 0.86 +0.9
1,288,298 + +0.7
1,288,301 + -0.1
1,288,369 + +1.3
1,288,369 + +1.4
1,288,412 + +1.7
1,288,412 + -1.8
1,288,547 + -0.5
1,288,565 + +0.0
1,289,152 + ECD_01218 0.72 -0.5
1,289,164 + ECD_01218 0.73 -1.7
1,289,231 + ECD_01218 0.80 -0.0
1,289,317 + ECD_01218 0.90 +1.8
1,289,377 + -1.0
1,289,377 + +0.5
1,289,377 + -2.0

Or see this region's nucleotide sequence