Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01216 and ECD_01217 are separated by 737 nucleotides ECD_01217 and ECD_01218 are separated by 85 nucleotides
ECD_01216: ECD_01216 - UPF0056 family inner membrane protein, at 1,285,389 to 1,286,036
_01216
ECD_01217: ECD_01217 - oligopeptide ABC transporter periplasmic binding protein, at 1,286,774 to 1,288,405
_01217
ECD_01218: ECD_01218 - oligopeptide ABC transporter permease, at 1,288,491 to 1,289,411
_01218
Position (kb)
1286
1287
1288
1289 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1285.829 kb on + strand, within ECD_01216 at 1285.991 kb on + strand at 1286.610 kb on + strand at 1286.610 kb on + strand at 1286.610 kb on + strand at 1286.658 kb on + strand at 1286.658 kb on + strand at 1286.658 kb on + strand at 1286.658 kb on + strand at 1286.658 kb on + strand at 1286.658 kb on + strand at 1286.750 kb on + strand at 1286.802 kb on + strand at 1286.859 kb on + strand at 1286.859 kb on + strand at 1286.962 kb on + strand, within ECD_01217 at 1286.962 kb on + strand, within ECD_01217 at 1286.965 kb on + strand, within ECD_01217 at 1287.049 kb on + strand, within ECD_01217 at 1287.134 kb on + strand, within ECD_01217 at 1287.136 kb on + strand, within ECD_01217 at 1287.282 kb on + strand, within ECD_01217 at 1287.319 kb on + strand, within ECD_01217 at 1287.403 kb on + strand, within ECD_01217 at 1287.479 kb on + strand, within ECD_01217 at 1287.519 kb on - strand, within ECD_01217 at 1287.519 kb on - strand, within ECD_01217 at 1287.671 kb on + strand, within ECD_01217 at 1287.944 kb on + strand, within ECD_01217 at 1287.946 kb on + strand, within ECD_01217 at 1288.174 kb on + strand, within ECD_01217 at 1288.174 kb on + strand, within ECD_01217 at 1288.174 kb on + strand, within ECD_01217 at 1288.298 kb on + strand at 1288.301 kb on + strand at 1288.369 kb on + strand at 1288.369 kb on + strand at 1288.412 kb on + strand at 1288.412 kb on + strand at 1288.547 kb on + strand at 1288.565 kb on + strand at 1289.152 kb on + strand, within ECD_01218 at 1289.164 kb on + strand, within ECD_01218 at 1289.231 kb on + strand, within ECD_01218 at 1289.317 kb on + strand, within ECD_01218 at 1289.377 kb on + strand at 1289.377 kb on + strand at 1289.377 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 1,285,829 + ECD_01216 0.68 -0.4 1,285,991 + -1.0 1,286,610 + +0.2 1,286,610 + +0.5 1,286,610 + +0.0 1,286,658 + +1.8 1,286,658 + -0.4 1,286,658 + -1.8 1,286,658 + +0.6 1,286,658 + +0.6 1,286,658 + +1.3 1,286,750 + -0.3 1,286,802 + -0.0 1,286,859 + +1.2 1,286,859 + +0.1 1,286,962 + ECD_01217 0.12 +1.3 1,286,962 + ECD_01217 0.12 +0.4 1,286,965 + ECD_01217 0.12 -0.5 1,287,049 + ECD_01217 0.17 +0.9 1,287,134 + ECD_01217 0.22 +0.5 1,287,136 + ECD_01217 0.22 +0.9 1,287,282 + ECD_01217 0.31 -0.1 1,287,319 + ECD_01217 0.33 +0.0 1,287,403 + ECD_01217 0.39 +1.8 1,287,479 + ECD_01217 0.43 +2.7 1,287,519 - ECD_01217 0.46 +1.3 1,287,519 - ECD_01217 0.46 +1.2 1,287,671 + ECD_01217 0.55 -1.3 1,287,944 + ECD_01217 0.72 +1.9 1,287,946 + ECD_01217 0.72 -0.4 1,288,174 + ECD_01217 0.86 +0.5 1,288,174 + ECD_01217 0.86 -1.7 1,288,174 + ECD_01217 0.86 +0.9 1,288,298 + +0.7 1,288,301 + -0.1 1,288,369 + +1.3 1,288,369 + +1.4 1,288,412 + +1.7 1,288,412 + -1.8 1,288,547 + -0.5 1,288,565 + +0.0 1,289,152 + ECD_01218 0.72 -0.5 1,289,164 + ECD_01218 0.73 -1.7 1,289,231 + ECD_01218 0.80 -0.0 1,289,317 + ECD_01218 0.90 +1.8 1,289,377 + -1.0 1,289,377 + +0.5 1,289,377 + -2.0
Or see this region's nucleotide sequence