Strain Fitness in Escherichia coli BL21 around ECD_01211

Experiment: Laval1257

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01210 and ECD_01211 are separated by 91 nucleotidesECD_01211 and ECD_01212 are separated by 201 nucleotides ECD_01210: ECD_01210 - putative patatin-like family phospholipase, at 1,276,998 to 1,277,942 _01210 ECD_01211: ECD_01211 - PcnB-degradosome interaction factor; response regulator, at 1,278,034 to 1,279,047 _01211 ECD_01212: ECD_01212 - glucose-1-phosphate uridylyltransferase, at 1,279,249 to 1,280,157 _01212 Position (kb) 1278 1279 1280Strain fitness (log2 ratio) -2 -1 0 1 2at 1277.184 kb on + strand, within ECD_01210at 1277.387 kb on + strand, within ECD_01210at 1277.480 kb on + strand, within ECD_01210at 1278.011 kb on + strandat 1278.200 kb on + strand, within ECD_01211at 1278.200 kb on + strand, within ECD_01211at 1278.251 kb on + strand, within ECD_01211at 1278.255 kb on + strand, within ECD_01211at 1278.944 kb on + strand, within ECD_01211at 1278.944 kb on + strand, within ECD_01211at 1279.103 kb on + strandat 1279.185 kb on + strandat 1279.186 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
remove
1,277,184 + ECD_01210 0.20 +1.0
1,277,387 + ECD_01210 0.41 +0.5
1,277,480 + ECD_01210 0.51 +2.2
1,278,011 + +0.4
1,278,200 + ECD_01211 0.16 -2.3
1,278,200 + ECD_01211 0.16 -0.1
1,278,251 + ECD_01211 0.21 -1.1
1,278,255 + ECD_01211 0.22 -0.7
1,278,944 + ECD_01211 0.90 -0.4
1,278,944 + ECD_01211 0.90 -0.3
1,279,103 + -0.3
1,279,185 + -0.8
1,279,186 - -1.5

Or see this region's nucleotide sequence