Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01196 and ECD_01197 are separated by 43 nucleotides ECD_01197 and ECD_01198 are separated by 326 nucleotides ECD_01198 and ECD_01199 are separated by 0 nucleotides ECD_01199 and ECD_01200 overlap by 8 nucleotides
ECD_01196: ECD_01196 - cation transport regulator, at 1,260,633 to 1,261,349
_01196
ECD_01197: ECD_01197 - putative sulfur relay protein, at 1,261,393 to 1,261,746
_01197
ECD_01198: ECD_01198 - putative invasin, at 1,262,073 to 1,263,326
_01198
ECD_01199: ECD_01199 - response regulator in two-component regulatory system with NarX, at 1,263,327 to 1,263,977
_01199
ECD_01200: ECD_01200 - sensory histidine kinase in two-component regulatory system with NarL, at 1,263,970 to 1,265,766
_01200
Position (kb) 1262
1263
1264 Strain fitness (log2 ratio) -1
0
1 at 1261.351 kb on + strand at 1261.471 kb on - strand, within ECD_01197 at 1261.486 kb on - strand, within ECD_01197 at 1262.043 kb on - strand at 1262.236 kb on + strand, within ECD_01198 at 1262.236 kb on + strand, within ECD_01198 at 1262.849 kb on + strand, within ECD_01198 at 1263.112 kb on + strand, within ECD_01198 at 1264.017 kb on + strand at 1264.106 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 1,261,351 + -0.9 1,261,471 - ECD_01197 0.22 +0.4 1,261,486 - ECD_01197 0.26 +0.4 1,262,043 - -0.4 1,262,236 + ECD_01198 0.13 +0.4 1,262,236 + ECD_01198 0.13 -0.6 1,262,849 + ECD_01198 0.62 -1.0 1,263,112 + ECD_01198 0.83 -0.8 1,264,017 + -0.8 1,264,106 - -1.0
Or see this region's nucleotide sequence