Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01158 and ECD_01159 overlap by 1 nucleotides ECD_01159 and ECD_01160 are separated by 45 nucleotides ECD_01160 and ECD_01161 are separated by 145 nucleotides
ECD_01158: ECD_01158 - translesion error-prone DNA polymerase V subunit; RecA-activated auto-protease, at 1,218,915 to 1,219,334
_01158
ECD_01159: ECD_01159 - translesion error-prone DNA polymerase V subunit; DNA polymerase activity, at 1,219,334 to 1,220,602
_01159
ECD_01160: ECD_01160 - oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I, at 1,220,648 to 1,221,178
_01160
ECD_01161: ECD_01161 - sodium:proton antiporter, at 1,221,324 to 1,222,865
_01161
Position (kb)
1219
1220
1221 Strain fitness (log2 ratio)
-2
-1
0
1 at 1218.911 kb on + strand at 1219.145 kb on + strand, within ECD_01158 at 1219.857 kb on + strand, within ECD_01159 at 1219.857 kb on + strand, within ECD_01159 at 1220.567 kb on - strand at 1220.918 kb on + strand, within ECD_01160 at 1220.919 kb on - strand, within ECD_01160 at 1220.942 kb on - strand, within ECD_01160 at 1220.943 kb on + strand, within ECD_01160 at 1220.943 kb on + strand, within ECD_01160 at 1220.944 kb on - strand, within ECD_01160 at 1220.944 kb on - strand, within ECD_01160 at 1220.944 kb on - strand, within ECD_01160 at 1220.967 kb on + strand, within ECD_01160 at 1221.042 kb on + strand, within ECD_01160 at 1221.047 kb on - strand, within ECD_01160 at 1221.304 kb on - strand at 1221.425 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 1,218,911 + -0.3 1,219,145 + ECD_01158 0.55 -0.8 1,219,857 + ECD_01159 0.41 -0.7 1,219,857 + ECD_01159 0.41 +0.0 1,220,567 - +0.0 1,220,918 + ECD_01160 0.51 -0.8 1,220,919 - ECD_01160 0.51 -0.7 1,220,942 - ECD_01160 0.55 +1.6 1,220,943 + ECD_01160 0.56 +0.6 1,220,943 + ECD_01160 0.56 +0.3 1,220,944 - ECD_01160 0.56 +1.0 1,220,944 - ECD_01160 0.56 +1.7 1,220,944 - ECD_01160 0.56 +0.9 1,220,967 + ECD_01160 0.60 -0.5 1,221,042 + ECD_01160 0.74 +1.7 1,221,047 - ECD_01160 0.75 -1.3 1,221,304 - -1.9 1,221,425 - +0.5
Or see this region's nucleotide sequence