Strain Fitness in Escherichia coli BL21 around ECD_01063

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01061 and ECD_01062 are separated by 235 nucleotidesECD_01062 and ECD_01063 are separated by 10 nucleotidesECD_01063 and ECD_01064 are separated by 1 nucleotides ECD_01061: ECD_01061 - multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin, at 1,126,688 to 1,127,896 _01061 ECD_01062: ECD_01062 - ribosomal-protein-S5-alanine N-acetyltransferase, at 1,128,132 to 1,128,716 _01062 ECD_01063: ECD_01063 - UPF0502 family protein, at 1,128,727 to 1,129,374 _01063 ECD_01064: ECD_01064 - putative oxidoreductase, at 1,129,376 to 1,130,299 _01064 Position (kb) 1128 1129 1130Strain fitness (log2 ratio) -2 -1 0 1 2at 1128.079 kb on + strandat 1128.079 kb on + strandat 1128.081 kb on + strandat 1128.084 kb on + strandat 1128.085 kb on - strandat 1128.122 kb on + strandat 1128.126 kb on + strandat 1128.341 kb on + strand, within ECD_01062at 1128.361 kb on - strand, within ECD_01062at 1128.524 kb on + strand, within ECD_01062at 1128.525 kb on - strand, within ECD_01062at 1128.542 kb on + strand, within ECD_01062at 1128.542 kb on + strand, within ECD_01062at 1128.543 kb on - strand, within ECD_01062at 1128.555 kb on - strand, within ECD_01062at 1128.564 kb on + strand, within ECD_01062at 1128.564 kb on + strand, within ECD_01062at 1128.564 kb on + strand, within ECD_01062at 1128.564 kb on + strand, within ECD_01062at 1128.564 kb on + strand, within ECD_01062at 1128.639 kb on + strand, within ECD_01062at 1128.925 kb on + strand, within ECD_01063at 1128.929 kb on + strand, within ECD_01063at 1128.967 kb on + strand, within ECD_01063at 1129.213 kb on + strand, within ECD_01063at 1129.407 kb on + strandat 1129.618 kb on + strand, within ECD_01064at 1129.819 kb on + strand, within ECD_01064at 1129.935 kb on + strand, within ECD_01064at 1130.011 kb on + strand, within ECD_01064at 1130.306 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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1,128,079 + -2.4
1,128,079 + -2.7
1,128,081 + +1.3
1,128,084 + +0.4
1,128,085 - +1.1
1,128,122 + +0.0
1,128,126 + +0.1
1,128,341 + ECD_01062 0.36 +1.6
1,128,361 - ECD_01062 0.39 -0.6
1,128,524 + ECD_01062 0.67 -1.6
1,128,525 - ECD_01062 0.67 +0.3
1,128,542 + ECD_01062 0.70 +1.2
1,128,542 + ECD_01062 0.70 -0.4
1,128,543 - ECD_01062 0.70 -1.3
1,128,555 - ECD_01062 0.72 +0.2
1,128,564 + ECD_01062 0.74 -0.6
1,128,564 + ECD_01062 0.74 +0.9
1,128,564 + ECD_01062 0.74 -1.1
1,128,564 + ECD_01062 0.74 +0.8
1,128,564 + ECD_01062 0.74 -0.1
1,128,639 + ECD_01062 0.87 -0.5
1,128,925 + ECD_01063 0.31 -2.0
1,128,929 + ECD_01063 0.31 -0.2
1,128,967 + ECD_01063 0.37 +0.6
1,129,213 + ECD_01063 0.75 +2.7
1,129,407 + -0.2
1,129,618 + ECD_01064 0.26 +0.6
1,129,819 + ECD_01064 0.48 +0.5
1,129,935 + ECD_01064 0.60 +0.8
1,130,011 + ECD_01064 0.69 -0.8
1,130,306 + +0.4

Or see this region's nucleotide sequence