Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01061 and ECD_01062 are separated by 235 nucleotides ECD_01062 and ECD_01063 are separated by 10 nucleotides ECD_01063 and ECD_01064 are separated by 1 nucleotides
ECD_01061: ECD_01061 - multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin, at 1,126,688 to 1,127,896
_01061
ECD_01062: ECD_01062 - ribosomal-protein-S5-alanine N-acetyltransferase, at 1,128,132 to 1,128,716
_01062
ECD_01063: ECD_01063 - UPF0502 family protein, at 1,128,727 to 1,129,374
_01063
ECD_01064: ECD_01064 - putative oxidoreductase, at 1,129,376 to 1,130,299
_01064
Position (kb)
1128
1129
1130 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1128.079 kb on + strand at 1128.079 kb on + strand at 1128.081 kb on + strand at 1128.084 kb on + strand at 1128.085 kb on - strand at 1128.122 kb on + strand at 1128.126 kb on + strand at 1128.341 kb on + strand, within ECD_01062 at 1128.361 kb on - strand, within ECD_01062 at 1128.524 kb on + strand, within ECD_01062 at 1128.525 kb on - strand, within ECD_01062 at 1128.542 kb on + strand, within ECD_01062 at 1128.542 kb on + strand, within ECD_01062 at 1128.543 kb on - strand, within ECD_01062 at 1128.555 kb on - strand, within ECD_01062 at 1128.564 kb on + strand, within ECD_01062 at 1128.564 kb on + strand, within ECD_01062 at 1128.564 kb on + strand, within ECD_01062 at 1128.564 kb on + strand, within ECD_01062 at 1128.564 kb on + strand, within ECD_01062 at 1128.639 kb on + strand, within ECD_01062 at 1128.925 kb on + strand, within ECD_01063 at 1128.929 kb on + strand, within ECD_01063 at 1128.967 kb on + strand, within ECD_01063 at 1129.213 kb on + strand, within ECD_01063 at 1129.407 kb on + strand at 1129.618 kb on + strand, within ECD_01064 at 1129.819 kb on + strand, within ECD_01064 at 1129.935 kb on + strand, within ECD_01064 at 1130.011 kb on + strand, within ECD_01064 at 1130.306 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 1,128,079 + -2.4 1,128,079 + -2.7 1,128,081 + +1.3 1,128,084 + +0.4 1,128,085 - +1.1 1,128,122 + +0.0 1,128,126 + +0.1 1,128,341 + ECD_01062 0.36 +1.6 1,128,361 - ECD_01062 0.39 -0.6 1,128,524 + ECD_01062 0.67 -1.6 1,128,525 - ECD_01062 0.67 +0.3 1,128,542 + ECD_01062 0.70 +1.2 1,128,542 + ECD_01062 0.70 -0.4 1,128,543 - ECD_01062 0.70 -1.3 1,128,555 - ECD_01062 0.72 +0.2 1,128,564 + ECD_01062 0.74 -0.6 1,128,564 + ECD_01062 0.74 +0.9 1,128,564 + ECD_01062 0.74 -1.1 1,128,564 + ECD_01062 0.74 +0.8 1,128,564 + ECD_01062 0.74 -0.1 1,128,639 + ECD_01062 0.87 -0.5 1,128,925 + ECD_01063 0.31 -2.0 1,128,929 + ECD_01063 0.31 -0.2 1,128,967 + ECD_01063 0.37 +0.6 1,129,213 + ECD_01063 0.75 +2.7 1,129,407 + -0.2 1,129,618 + ECD_01064 0.26 +0.6 1,129,819 + ECD_01064 0.48 +0.5 1,129,935 + ECD_01064 0.60 +0.8 1,130,011 + ECD_01064 0.69 -0.8 1,130,306 + +0.4
Or see this region's nucleotide sequence