Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01046 and ECD_01047 are separated by 172 nucleotides ECD_01047 and ECD_01048 are separated by 0 nucleotides ECD_01048 and ECD_01049 are separated by 82 nucleotides
ECD_01046: ECD_01046 - OPG biosynthetic ACP-dependent transmembrane UDP-glucose beta-1,2 glycosyltransferase; nutrient-dependent cell size regulator, FtsZ assembly antagonist, at 1,113,430 to 1,115,973
_01046
ECD_01047: ECD_01047 - outer membrane integrity lipoprotein, at 1,116,146 to 1,116,373
_01047
ECD_01048: ECD_01048 - multicopy suppressor of secY and secA, at 1,116,374 to 1,116,748
_01048
ECD_01049: ECD_01049 - putative drug efflux system protein, at 1,116,831 to 1,118,057
_01049
Position (kb) 1116
1117 Strain fitness (log2 ratio) -1
0
1 at 1115.423 kb on + strand, within ECD_01046 at 1115.742 kb on + strand at 1116.366 kb on - strand at 1116.465 kb on - strand, within ECD_01048 at 1116.470 kb on - strand, within ECD_01048 at 1116.495 kb on - strand, within ECD_01048 at 1116.739 kb on - strand at 1117.325 kb on - strand, within ECD_01049 at 1117.325 kb on - strand, within ECD_01049 at 1117.325 kb on - strand, within ECD_01049
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 1,115,423 + ECD_01046 0.78 -0.1 1,115,742 + +0.2 1,116,366 - -0.2 1,116,465 - ECD_01048 0.24 -1.1 1,116,470 - ECD_01048 0.26 +0.2 1,116,495 - ECD_01048 0.32 +0.1 1,116,739 - -0.5 1,117,325 - ECD_01049 0.40 -0.7 1,117,325 - ECD_01049 0.40 -0.5 1,117,325 - ECD_01049 0.40 -0.4
Or see this region's nucleotide sequence