Strain Fitness in Escherichia coli BL21 around ECD_00997

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00996 and ECD_00997 are separated by 82 nucleotidesECD_00997 and ECD_00998 overlap by 28 nucleotidesECD_00998 and ECD_00999 are separated by 129 nucleotides ECD_00996: ECD_00996 - hybrid sensory histidine kinase in two-component regulatory system with TorR, at 1,057,722 to 1,060,466 _00996 ECD_00997: ECD_00997 - periplasmic sensory protein associated with the TorRS two-component regulatory system, at 1,060,549 to 1,061,577 _00997 ECD_00998: ECD_00998 - response regulator in two-component regulatory system with TorS, at 1,061,550 to 1,062,242 _00998 ECD_00999: ECD_00999 - trimethylamine N-oxide (TMAO) reductase I, cytochrome c-type subunit, at 1,062,372 to 1,063,544 _00999 Position (kb) 1060 1061 1062Strain fitness (log2 ratio) -2 -1 0 1at 1060.036 kb on - strand, within ECD_00996at 1060.317 kb on - strandat 1060.518 kb on - strandat 1060.720 kb on + strand, within ECD_00997at 1060.738 kb on + strand, within ECD_00997at 1060.941 kb on - strand, within ECD_00997at 1061.143 kb on - strand, within ECD_00997at 1061.151 kb on + strand, within ECD_00997at 1061.691 kb on - strand, within ECD_00998at 1062.015 kb on - strand, within ECD_00998at 1062.190 kb on - strandat 1062.190 kb on - strandat 1062.333 kb on - strandat 1062.469 kb on + strandat 1062.470 kb on - strandat 1062.531 kb on - strand, within ECD_00999at 1062.531 kb on - strand, within ECD_00999at 1062.552 kb on + strand, within ECD_00999at 1062.555 kb on - strand, within ECD_00999

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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1,060,036 - ECD_00996 0.84 +0.2
1,060,317 - -0.1
1,060,518 - +0.3
1,060,720 + ECD_00997 0.17 -0.8
1,060,738 + ECD_00997 0.18 -0.5
1,060,941 - ECD_00997 0.38 +1.3
1,061,143 - ECD_00997 0.58 -1.0
1,061,151 + ECD_00997 0.59 -1.5
1,061,691 - ECD_00998 0.20 -0.0
1,062,015 - ECD_00998 0.67 -0.3
1,062,190 - -1.5
1,062,190 - -2.0
1,062,333 - +0.6
1,062,469 + +1.4
1,062,470 - +0.6
1,062,531 - ECD_00999 0.14 +0.8
1,062,531 - ECD_00999 0.14 -0.3
1,062,552 + ECD_00999 0.15 +0.8
1,062,555 - ECD_00999 0.16 +0.6

Or see this region's nucleotide sequence