Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00964 and ECD_00965 are separated by 18 nucleotides ECD_00965 and ECD_00966 are separated by 122 nucleotides ECD_00966 and ECD_00967 are separated by 31 nucleotides ECD_00967 and ECD_00968 are separated by 95 nucleotides
ECD_00964: ECD_00964 - putative transporter, FUSC superfamily inner membrane protein, at 1,026,819 to 1,028,972
_00964
ECD_00965: ECD_00965 - DUF307 family inner membrane protein, at 1,028,991 to 1,029,437
_00965
ECD_00966: ECD_00966 - DNA helicase IV, at 1,029,560 to 1,031,614
_00966
ECD_00967: ECD_00967 - methylglyoxal synthase, at 1,031,646 to 1,032,104
_00967
ECD_00968: ECD_00968 - UPF0319 family protein, at 1,032,200 to 1,032,862
_00968
Position (kb)
1029
1030
1031
1032 Strain fitness (log2 ratio)
-2
-1
0
1 at 1028.594 kb on + strand, within ECD_00964 at 1028.594 kb on + strand, within ECD_00964 at 1028.595 kb on - strand, within ECD_00964 at 1028.595 kb on - strand, within ECD_00964 at 1028.595 kb on - strand, within ECD_00964 at 1028.595 kb on - strand, within ECD_00964 at 1028.600 kb on - strand, within ECD_00964 at 1028.923 kb on + strand at 1028.973 kb on - strand at 1028.993 kb on - strand at 1029.169 kb on - strand, within ECD_00965 at 1029.450 kb on + strand at 1029.528 kb on + strand at 1029.551 kb on + strand at 1029.717 kb on + strand at 1030.357 kb on + strand, within ECD_00966 at 1030.358 kb on - strand, within ECD_00966 at 1030.402 kb on + strand, within ECD_00966 at 1030.405 kb on + strand, within ECD_00966 at 1030.579 kb on + strand, within ECD_00966 at 1030.580 kb on - strand, within ECD_00966 at 1030.723 kb on + strand, within ECD_00966 at 1030.723 kb on + strand, within ECD_00966 at 1030.858 kb on + strand, within ECD_00966 at 1031.071 kb on + strand, within ECD_00966 at 1031.498 kb on + strand at 1031.957 kb on + strand, within ECD_00967 at 1031.977 kb on + strand, within ECD_00967 at 1031.983 kb on - strand, within ECD_00967 at 1031.983 kb on - strand, within ECD_00967 at 1032.066 kb on - strand at 1032.082 kb on - strand at 1032.110 kb on - strand at 1032.117 kb on + strand at 1032.143 kb on - strand at 1032.143 kb on - strand at 1032.349 kb on + strand, within ECD_00968
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 1,028,594 + ECD_00964 0.82 -1.9 1,028,594 + ECD_00964 0.82 -1.5 1,028,595 - ECD_00964 0.82 +0.3 1,028,595 - ECD_00964 0.82 +0.9 1,028,595 - ECD_00964 0.82 -0.3 1,028,595 - ECD_00964 0.82 -0.4 1,028,600 - ECD_00964 0.83 -0.8 1,028,923 + -0.2 1,028,973 - +0.3 1,028,993 - -0.7 1,029,169 - ECD_00965 0.40 -0.2 1,029,450 + -1.8 1,029,528 + -0.0 1,029,551 + +0.9 1,029,717 + -2.0 1,030,357 + ECD_00966 0.39 -0.9 1,030,358 - ECD_00966 0.39 -1.0 1,030,402 + ECD_00966 0.41 -0.0 1,030,405 + ECD_00966 0.41 -1.6 1,030,579 + ECD_00966 0.50 -2.2 1,030,580 - ECD_00966 0.50 -0.9 1,030,723 + ECD_00966 0.57 -1.3 1,030,723 + ECD_00966 0.57 -0.9 1,030,858 + ECD_00966 0.63 +1.4 1,031,071 + ECD_00966 0.74 -0.8 1,031,498 + -0.9 1,031,957 + ECD_00967 0.68 +0.5 1,031,977 + ECD_00967 0.72 -0.8 1,031,983 - ECD_00967 0.73 +0.9 1,031,983 - ECD_00967 0.73 +0.6 1,032,066 - -0.1 1,032,082 - +1.4 1,032,110 - -0.3 1,032,117 + -1.8 1,032,143 - +0.7 1,032,143 - -0.6 1,032,349 + ECD_00968 0.22 +1.1
Or see this region's nucleotide sequence