Strain Fitness in Escherichia coli BL21 around ECD_00966

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00964 and ECD_00965 are separated by 18 nucleotidesECD_00965 and ECD_00966 are separated by 122 nucleotidesECD_00966 and ECD_00967 are separated by 31 nucleotidesECD_00967 and ECD_00968 are separated by 95 nucleotides ECD_00964: ECD_00964 - putative transporter, FUSC superfamily inner membrane protein, at 1,026,819 to 1,028,972 _00964 ECD_00965: ECD_00965 - DUF307 family inner membrane protein, at 1,028,991 to 1,029,437 _00965 ECD_00966: ECD_00966 - DNA helicase IV, at 1,029,560 to 1,031,614 _00966 ECD_00967: ECD_00967 - methylglyoxal synthase, at 1,031,646 to 1,032,104 _00967 ECD_00968: ECD_00968 - UPF0319 family protein, at 1,032,200 to 1,032,862 _00968 Position (kb) 1029 1030 1031 1032Strain fitness (log2 ratio) -2 -1 0 1at 1028.594 kb on + strand, within ECD_00964at 1028.594 kb on + strand, within ECD_00964at 1028.595 kb on - strand, within ECD_00964at 1028.595 kb on - strand, within ECD_00964at 1028.595 kb on - strand, within ECD_00964at 1028.595 kb on - strand, within ECD_00964at 1028.600 kb on - strand, within ECD_00964at 1028.923 kb on + strandat 1028.973 kb on - strandat 1028.993 kb on - strandat 1029.169 kb on - strand, within ECD_00965at 1029.450 kb on + strandat 1029.528 kb on + strandat 1029.551 kb on + strandat 1029.717 kb on + strandat 1030.357 kb on + strand, within ECD_00966at 1030.358 kb on - strand, within ECD_00966at 1030.402 kb on + strand, within ECD_00966at 1030.405 kb on + strand, within ECD_00966at 1030.579 kb on + strand, within ECD_00966at 1030.580 kb on - strand, within ECD_00966at 1030.723 kb on + strand, within ECD_00966at 1030.723 kb on + strand, within ECD_00966at 1030.858 kb on + strand, within ECD_00966at 1031.071 kb on + strand, within ECD_00966at 1031.498 kb on + strandat 1031.957 kb on + strand, within ECD_00967at 1031.977 kb on + strand, within ECD_00967at 1031.983 kb on - strand, within ECD_00967at 1031.983 kb on - strand, within ECD_00967at 1032.066 kb on - strandat 1032.082 kb on - strandat 1032.110 kb on - strandat 1032.117 kb on + strandat 1032.143 kb on - strandat 1032.143 kb on - strandat 1032.349 kb on + strand, within ECD_00968

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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1,028,594 + ECD_00964 0.82 -1.9
1,028,594 + ECD_00964 0.82 -1.5
1,028,595 - ECD_00964 0.82 +0.3
1,028,595 - ECD_00964 0.82 +0.9
1,028,595 - ECD_00964 0.82 -0.3
1,028,595 - ECD_00964 0.82 -0.4
1,028,600 - ECD_00964 0.83 -0.8
1,028,923 + -0.2
1,028,973 - +0.3
1,028,993 - -0.7
1,029,169 - ECD_00965 0.40 -0.2
1,029,450 + -1.8
1,029,528 + -0.0
1,029,551 + +0.9
1,029,717 + -2.0
1,030,357 + ECD_00966 0.39 -0.9
1,030,358 - ECD_00966 0.39 -1.0
1,030,402 + ECD_00966 0.41 -0.0
1,030,405 + ECD_00966 0.41 -1.6
1,030,579 + ECD_00966 0.50 -2.2
1,030,580 - ECD_00966 0.50 -0.9
1,030,723 + ECD_00966 0.57 -1.3
1,030,723 + ECD_00966 0.57 -0.9
1,030,858 + ECD_00966 0.63 +1.4
1,031,071 + ECD_00966 0.74 -0.8
1,031,498 + -0.9
1,031,957 + ECD_00967 0.68 +0.5
1,031,977 + ECD_00967 0.72 -0.8
1,031,983 - ECD_00967 0.73 +0.9
1,031,983 - ECD_00967 0.73 +0.6
1,032,066 - -0.1
1,032,082 - +1.4
1,032,110 - -0.3
1,032,117 + -1.8
1,032,143 - +0.7
1,032,143 - -0.6
1,032,349 + ECD_00968 0.22 +1.1

Or see this region's nucleotide sequence