Strain Fitness in Escherichia coli BL21 around ECD_00952

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00951 and ECD_00952 are separated by 243 nucleotidesECD_00952 and ECD_00953 are separated by 11 nucleotides ECD_00951: ECD_00951 - 6-N-hydroxylaminopurine detoxification oxidoreductase, at 1,011,580 to 1,012,689 _00951 ECD_00952: ECD_00952 - 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent, at 1,012,933 to 1,015,041 _00952 ECD_00953: ECD_00953 - replication regulatory ABC-F family DNA-binding ATPase, at 1,015,053 to 1,016,960 _00953 Position (kb) 1012 1013 1014 1015 1016Strain fitness (log2 ratio) -2 -1 0 1at 1012.013 kb on - strand, within ECD_00951at 1012.518 kb on + strand, within ECD_00951at 1012.526 kb on - strand, within ECD_00951at 1012.560 kb on + strand, within ECD_00951at 1012.711 kb on + strandat 1012.742 kb on - strandat 1012.744 kb on + strandat 1012.744 kb on + strandat 1012.744 kb on + strandat 1012.749 kb on - strandat 1012.750 kb on + strandat 1012.750 kb on + strandat 1012.893 kb on + strandat 1012.893 kb on + strandat 1013.103 kb on + strandat 1013.125 kb on - strandat 1013.141 kb on + strandat 1013.408 kb on + strand, within ECD_00952at 1013.408 kb on + strand, within ECD_00952at 1013.408 kb on + strand, within ECD_00952at 1013.694 kb on + strand, within ECD_00952at 1013.695 kb on - strand, within ECD_00952at 1013.987 kb on + strand, within ECD_00952at 1013.987 kb on + strand, within ECD_00952at 1014.115 kb on + strand, within ECD_00952at 1014.214 kb on + strand, within ECD_00952at 1014.236 kb on - strand, within ECD_00952at 1014.645 kb on + strand, within ECD_00952at 1014.649 kb on + strand, within ECD_00952at 1015.051 kb on + strandat 1015.051 kb on + strandat 1015.067 kb on + strandat 1015.707 kb on - strand, within ECD_00953at 1015.752 kb on + strand, within ECD_00953

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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1,012,013 - ECD_00951 0.39 +0.7
1,012,518 + ECD_00951 0.85 +0.8
1,012,526 - ECD_00951 0.85 +0.5
1,012,560 + ECD_00951 0.88 +0.1
1,012,711 + -1.1
1,012,742 - -0.8
1,012,744 + +0.9
1,012,744 + -2.7
1,012,744 + +0.1
1,012,749 - +1.5
1,012,750 + -1.9
1,012,750 + +1.2
1,012,893 + -1.2
1,012,893 + -0.3
1,013,103 + +0.3
1,013,125 - +0.3
1,013,141 + -0.1
1,013,408 + ECD_00952 0.23 -0.5
1,013,408 + ECD_00952 0.23 -0.9
1,013,408 + ECD_00952 0.23 +0.3
1,013,694 + ECD_00952 0.36 -1.4
1,013,695 - ECD_00952 0.36 -0.9
1,013,987 + ECD_00952 0.50 -0.7
1,013,987 + ECD_00952 0.50 +1.3
1,014,115 + ECD_00952 0.56 -0.4
1,014,214 + ECD_00952 0.61 -1.1
1,014,236 - ECD_00952 0.62 -1.8
1,014,645 + ECD_00952 0.81 -0.4
1,014,649 + ECD_00952 0.81 +0.8
1,015,051 + +0.7
1,015,051 + +0.6
1,015,067 + -0.0
1,015,707 - ECD_00953 0.34 -0.7
1,015,752 + ECD_00953 0.37 -0.5

Or see this region's nucleotide sequence