Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00921 and ECD_00922 overlap by 4 nucleotides ECD_00922 and ECD_00923 are separated by 153 nucleotides ECD_00923 and ECD_00924 overlap by 24 nucleotides ECD_00924 and ECD_00925 are separated by 135 nucleotides
ECD_00921: ECD_00921 - peroxide and acid resistance protein, UPF0434 family, at 975,763 to 975,945
_00921
ECD_00922: ECD_00922 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 975,942 to 976,688
_00922
ECD_00923: ECD_00923 - protein kinase-like domain protein, at 976,842 to 977,735
_00923
ECD_00924: ECD_00924 - envelope biogenesis factor; DUF218 superfamily protein, at 977,712 to 978,491
_00924
ECD_00925: ECD_00925 - putative S-adenosyl-L-methionine-dependent methyltransferase, at 978,627 to 979,412
_00925
Position (kb) 976
977
978 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 976.942 kb on - strand, within ECD_00923 at 977.068 kb on - strand, within ECD_00923 at 977.068 kb on - strand, within ECD_00923 at 977.204 kb on - strand, within ECD_00923 at 977.396 kb on - strand, within ECD_00923 at 977.634 kb on + strand, within ECD_00923 at 978.183 kb on - strand, within ECD_00924 at 978.516 kb on + strand at 978.516 kb on + strand at 978.518 kb on + strand at 978.518 kb on + strand at 978.518 kb on + strand at 978.519 kb on - strand at 978.538 kb on + strand at 978.538 kb on + strand at 978.541 kb on + strand at 978.541 kb on + strand at 978.541 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 976,942 - ECD_00923 0.11 -1.2 977,068 - ECD_00923 0.25 -1.2 977,068 - ECD_00923 0.25 -1.5 977,204 - ECD_00923 0.40 -0.8 977,396 - ECD_00923 0.62 -1.0 977,634 + ECD_00923 0.89 -0.0 978,183 - ECD_00924 0.60 +0.7 978,516 + -1.5 978,516 + -1.3 978,518 + -3.2 978,518 + -0.9 978,518 + -0.2 978,519 - -0.8 978,538 + +0.3 978,538 + +0.7 978,541 + -0.5 978,541 + +6.9 978,541 + +0.2
Or see this region's nucleotide sequence