Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00873 and ECD_00874 are separated by 98 nucleotides ECD_00874 and ECD_00875 are separated by 10 nucleotides
ECD_00873: ECD_00873 - putative NAD(P)H-dependent oxidoreductase, at 910,444 to 911,457
_00873
ECD_00874: ECD_00874 - putative NAD-dependent oxidoreductase, at 911,556 to 912,986
_00874
ECD_00875: ECD_00875 - L-allo-threonine aldolase, PLP-dependent, at 912,997 to 913,998
_00875
Position (kb) 911
912
913 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 910.628 kb on - strand, within ECD_00873 at 910.836 kb on - strand, within ECD_00873 at 910.836 kb on - strand, within ECD_00873 at 910.839 kb on - strand, within ECD_00873 at 910.902 kb on + strand, within ECD_00873 at 910.903 kb on - strand, within ECD_00873 at 911.001 kb on + strand, within ECD_00873 at 911.130 kb on + strand, within ECD_00873 at 911.278 kb on - strand, within ECD_00873 at 911.558 kb on - strand at 911.612 kb on + strand at 911.697 kb on - strand at 911.764 kb on - strand, within ECD_00874 at 911.771 kb on + strand, within ECD_00874 at 911.772 kb on - strand, within ECD_00874 at 911.772 kb on - strand, within ECD_00874 at 911.772 kb on - strand, within ECD_00874 at 911.836 kb on + strand, within ECD_00874 at 911.836 kb on + strand, within ECD_00874 at 911.868 kb on - strand, within ECD_00874 at 911.868 kb on - strand, within ECD_00874 at 912.237 kb on - strand, within ECD_00874 at 912.237 kb on - strand, within ECD_00874 at 912.402 kb on + strand, within ECD_00874 at 912.497 kb on - strand, within ECD_00874 at 912.497 kb on - strand, within ECD_00874 at 912.573 kb on + strand, within ECD_00874 at 912.949 kb on + strand at 912.949 kb on + strand at 913.122 kb on - strand, within ECD_00875 at 913.171 kb on - strand, within ECD_00875 at 913.171 kb on - strand, within ECD_00875 at 913.171 kb on - strand, within ECD_00875 at 913.171 kb on - strand, within ECD_00875 at 913.171 kb on - strand, within ECD_00875 at 913.173 kb on + strand, within ECD_00875 at 913.173 kb on + strand, within ECD_00875 at 913.174 kb on - strand, within ECD_00875 at 913.267 kb on - strand, within ECD_00875 at 913.280 kb on + strand, within ECD_00875 at 913.281 kb on - strand, within ECD_00875 at 913.281 kb on - strand, within ECD_00875 at 913.357 kb on - strand, within ECD_00875 at 913.439 kb on + strand, within ECD_00875 at 913.469 kb on + strand, within ECD_00875 at 913.770 kb on + strand, within ECD_00875 at 913.771 kb on - strand, within ECD_00875 at 913.772 kb on + strand, within ECD_00875 at 913.772 kb on + strand, within ECD_00875 at 913.773 kb on - strand, within ECD_00875 at 913.773 kb on - strand, within ECD_00875 at 913.891 kb on - strand, within ECD_00875
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 910,628 - ECD_00873 0.18 +3.3 910,836 - ECD_00873 0.39 -0.7 910,836 - ECD_00873 0.39 +0.5 910,839 - ECD_00873 0.39 -0.5 910,902 + ECD_00873 0.45 -1.1 910,903 - ECD_00873 0.45 -0.7 911,001 + ECD_00873 0.55 +0.8 911,130 + ECD_00873 0.68 +1.7 911,278 - ECD_00873 0.82 -0.6 911,558 - -2.3 911,612 + +0.4 911,697 - -0.0 911,764 - ECD_00874 0.15 +1.5 911,771 + ECD_00874 0.15 +0.8 911,772 - ECD_00874 0.15 +1.5 911,772 - ECD_00874 0.15 +1.1 911,772 - ECD_00874 0.15 +0.5 911,836 + ECD_00874 0.20 +0.2 911,836 + ECD_00874 0.20 +0.2 911,868 - ECD_00874 0.22 -0.7 911,868 - ECD_00874 0.22 +0.3 912,237 - ECD_00874 0.48 -0.3 912,237 - ECD_00874 0.48 +0.9 912,402 + ECD_00874 0.59 +0.2 912,497 - ECD_00874 0.66 -1.3 912,497 - ECD_00874 0.66 +1.3 912,573 + ECD_00874 0.71 -0.1 912,949 + +0.4 912,949 + +0.0 913,122 - ECD_00875 0.12 -0.5 913,171 - ECD_00875 0.17 -0.2 913,171 - ECD_00875 0.17 -0.7 913,171 - ECD_00875 0.17 -1.0 913,171 - ECD_00875 0.17 +1.0 913,171 - ECD_00875 0.17 +0.9 913,173 + ECD_00875 0.18 -1.1 913,173 + ECD_00875 0.18 +0.4 913,174 - ECD_00875 0.18 +0.7 913,267 - ECD_00875 0.27 +0.2 913,280 + ECD_00875 0.28 -0.7 913,281 - ECD_00875 0.28 -0.7 913,281 - ECD_00875 0.28 -0.4 913,357 - ECD_00875 0.36 +0.8 913,439 + ECD_00875 0.44 -1.2 913,469 + ECD_00875 0.47 +0.4 913,770 + ECD_00875 0.77 +0.1 913,771 - ECD_00875 0.77 -1.2 913,772 + ECD_00875 0.77 -0.5 913,772 + ECD_00875 0.77 -0.5 913,773 - ECD_00875 0.77 -1.1 913,773 - ECD_00875 0.77 -0.4 913,891 - ECD_00875 0.89 -1.6
Or see this region's nucleotide sequence