Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00853 and ECD_00854 are separated by 29 nucleotides ECD_00854 and ECD_00855 are separated by 159 nucleotides ECD_00855 and ECD_00856 overlap by 17 nucleotides ECD_00856 and ECD_00857 are separated by 60 nucleotides
ECD_00853: ECD_00853 - inner membrane protein, at 894,793 to 895,170
_00853
ECD_00854: ECD_00854 - glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a), at 895,200 to 895,457
_00854
ECD_00855: ECD_00855 - DUF1418 family protein, at 895,617 to 895,904
_00855
ECD_00856: ECD_00856 - nitroreductase A, NADPH-dependent, FMN-dependent, at 895,888 to 896,610
_00856
ECD_00857: ECD_00857 - ribosomal protein S6 modification protein, at 896,671 to 897,573
_00857
Position (kb) 895
896
897 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 895.347 kb on - strand, within ECD_00854 at 895.347 kb on - strand, within ECD_00854 at 895.351 kb on - strand, within ECD_00854 at 895.354 kb on + strand, within ECD_00854 at 895.478 kb on + strand at 895.479 kb on - strand at 895.569 kb on + strand at 895.977 kb on + strand, within ECD_00856 at 895.977 kb on + strand, within ECD_00856 at 896.147 kb on + strand, within ECD_00856 at 896.269 kb on + strand, within ECD_00856 at 896.269 kb on + strand, within ECD_00856 at 896.270 kb on - strand, within ECD_00856 at 896.579 kb on - strand at 896.628 kb on - strand at 896.684 kb on + strand at 896.708 kb on - strand at 896.738 kb on + strand at 896.782 kb on + strand, within ECD_00857 at 896.792 kb on + strand, within ECD_00857 at 896.792 kb on + strand, within ECD_00857 at 896.877 kb on + strand, within ECD_00857 at 896.885 kb on - strand, within ECD_00857 at 897.207 kb on + strand, within ECD_00857 at 897.540 kb on + strand at 897.550 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 895,347 - ECD_00854 0.57 +1.4 895,347 - ECD_00854 0.57 +0.5 895,351 - ECD_00854 0.59 +0.8 895,354 + ECD_00854 0.60 +3.0 895,478 + +1.3 895,479 - -0.4 895,569 + -0.4 895,977 + ECD_00856 0.12 -0.3 895,977 + ECD_00856 0.12 +0.1 896,147 + ECD_00856 0.36 +0.0 896,269 + ECD_00856 0.53 +0.5 896,269 + ECD_00856 0.53 +1.1 896,270 - ECD_00856 0.53 +0.3 896,579 - -2.2 896,628 - -1.7 896,684 + +1.3 896,708 - -0.5 896,738 + +1.2 896,782 + ECD_00857 0.12 -0.0 896,792 + ECD_00857 0.13 -0.4 896,792 + ECD_00857 0.13 +0.1 896,877 + ECD_00857 0.23 +0.3 896,885 - ECD_00857 0.24 +0.2 897,207 + ECD_00857 0.59 -1.3 897,540 + +1.4 897,550 + +0.8
Or see this region's nucleotide sequence