Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00452 and ECD_00453 are separated by 115 nucleotides ECD_00453 and ECD_00454 are separated by 68 nucleotides
ECD_00452: ECD_00452 - putative DNA-binding transcriptional regulator, at 498,790 to 499,161
_00452
ECD_00453: ECD_00453 - tRNA 2-selenouridine synthase, selenophosphate-dependent, at 499,277 to 500,371
_00453
ECD_00454: ECD_00454 - allD operon transcriptional activator, at 500,440 to 501,366
_00454
Position (kb) 499
500
501 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 498.873 kb on + strand, within ECD_00452 at 498.969 kb on + strand, within ECD_00452 at 498.996 kb on + strand, within ECD_00452 at 499.043 kb on + strand, within ECD_00452 at 499.050 kb on + strand, within ECD_00452 at 499.202 kb on - strand at 499.258 kb on - strand at 499.266 kb on + strand at 499.266 kb on + strand at 499.266 kb on + strand at 499.266 kb on + strand at 499.267 kb on - strand at 499.539 kb on + strand, within ECD_00453 at 499.566 kb on + strand, within ECD_00453 at 499.647 kb on - strand, within ECD_00453 at 499.941 kb on - strand, within ECD_00453 at 500.056 kb on + strand, within ECD_00453 at 500.057 kb on - strand, within ECD_00453 at 500.092 kb on + strand, within ECD_00453 at 500.093 kb on - strand, within ECD_00453 at 500.206 kb on + strand, within ECD_00453 at 500.209 kb on - strand, within ECD_00453 at 500.312 kb on - strand at 500.320 kb on + strand at 500.371 kb on + strand at 500.372 kb on - strand at 500.372 kb on - strand at 500.442 kb on - strand at 500.468 kb on - strand at 500.514 kb on + strand at 500.514 kb on + strand at 500.706 kb on + strand, within ECD_00454 at 500.895 kb on + strand, within ECD_00454 at 500.896 kb on - strand, within ECD_00454 at 500.949 kb on - strand, within ECD_00454 at 500.949 kb on - strand, within ECD_00454 at 500.975 kb on + strand, within ECD_00454 at 501.173 kb on - strand, within ECD_00454 at 501.290 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 498,873 + ECD_00452 0.22 -0.9 498,969 + ECD_00452 0.48 +0.3 498,996 + ECD_00452 0.55 -1.0 499,043 + ECD_00452 0.68 +2.1 499,050 + ECD_00452 0.70 -1.5 499,202 - -0.6 499,258 - -0.8 499,266 + +0.7 499,266 + -0.0 499,266 + +0.5 499,266 + -1.7 499,267 - -0.5 499,539 + ECD_00453 0.24 -0.1 499,566 + ECD_00453 0.26 +0.0 499,647 - ECD_00453 0.34 -0.5 499,941 - ECD_00453 0.61 -1.0 500,056 + ECD_00453 0.71 -1.4 500,057 - ECD_00453 0.71 -1.4 500,092 + ECD_00453 0.74 -1.6 500,093 - ECD_00453 0.75 -2.3 500,206 + ECD_00453 0.85 +0.4 500,209 - ECD_00453 0.85 -1.5 500,312 - +0.7 500,320 + -0.6 500,371 + -1.6 500,372 - +0.2 500,372 - +0.2 500,442 - -0.8 500,468 - +0.7 500,514 + -2.4 500,514 + -0.5 500,706 + ECD_00454 0.29 +1.8 500,895 + ECD_00454 0.49 -0.0 500,896 - ECD_00454 0.49 -0.5 500,949 - ECD_00454 0.55 -0.2 500,949 - ECD_00454 0.55 -0.4 500,975 + ECD_00454 0.58 +0.3 501,173 - ECD_00454 0.79 +1.7 501,290 - -2.9
Or see this region's nucleotide sequence