Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00421 and ECD_00422 are separated by 52 nucleotides ECD_00422 and ECD_00423 overlap by 1 nucleotides ECD_00423 and ECD_00424 are separated by 109 nucleotides
ECD_00421: ECD_00421 - DNA polymerase III/DNA elongation factor III, tau and gamma subunits, at 461,138 to 463,069
_00421
ECD_00422: ECD_00422 - DNA-binding protein, putative nucleoid-associated protein, at 463,122 to 463,451
_00422
ECD_00423: ECD_00423 - gap repair protein, at 463,451 to 464,056
_00423
ECD_00424: ECD_00424 - protein refolding molecular co-chaperone Hsp90, Hsp70-dependent; heat-shock protein; ATPase, at 464,166 to 466,040
_00424
Position (kb) 463
464
465 Strain fitness (log2 ratio) -1
0
1
2
3 at 463.084 kb on + strand at 463.084 kb on + strand at 463.121 kb on + strand at 463.121 kb on + strand at 463.121 kb on + strand at 463.480 kb on + strand at 463.727 kb on + strand, within ECD_00423 at 463.763 kb on + strand, within ECD_00423 at 463.916 kb on + strand, within ECD_00423 at 463.916 kb on + strand, within ECD_00423 at 463.916 kb on + strand, within ECD_00423 at 463.916 kb on + strand, within ECD_00423 at 463.916 kb on + strand, within ECD_00423 at 463.917 kb on - strand, within ECD_00423 at 463.941 kb on - strand, within ECD_00423 at 464.042 kb on - strand at 464.094 kb on + strand at 464.095 kb on - strand at 464.150 kb on - strand at 464.158 kb on - strand at 464.164 kb on - strand at 464.164 kb on - strand at 464.164 kb on - strand at 464.164 kb on - strand at 464.270 kb on + strand at 464.270 kb on + strand at 464.271 kb on - strand at 464.271 kb on - strand at 464.276 kb on + strand at 464.649 kb on + strand, within ECD_00424 at 464.649 kb on + strand, within ECD_00424 at 464.649 kb on + strand, within ECD_00424 at 464.649 kb on + strand, within ECD_00424 at 464.649 kb on + strand, within ECD_00424 at 464.763 kb on + strand, within ECD_00424 at 464.987 kb on + strand, within ECD_00424 at 464.987 kb on + strand, within ECD_00424 at 464.988 kb on - strand, within ECD_00424 at 465.000 kb on + strand, within ECD_00424 at 465.000 kb on + strand, within ECD_00424 at 465.044 kb on + strand, within ECD_00424 at 465.044 kb on + strand, within ECD_00424
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 463,084 + -0.1 463,084 + -1.2 463,121 + +1.9 463,121 + +0.7 463,121 + +2.2 463,480 + -0.5 463,727 + ECD_00423 0.46 -0.4 463,763 + ECD_00423 0.51 -1.4 463,916 + ECD_00423 0.77 -0.4 463,916 + ECD_00423 0.77 -1.5 463,916 + ECD_00423 0.77 -0.2 463,916 + ECD_00423 0.77 -1.2 463,916 + ECD_00423 0.77 +0.9 463,917 - ECD_00423 0.77 -0.5 463,941 - ECD_00423 0.81 -0.4 464,042 - +0.2 464,094 + +1.3 464,095 - +1.5 464,150 - +2.4 464,158 - +2.7 464,164 - +2.3 464,164 - +2.9 464,164 - +2.9 464,164 - +2.2 464,270 + +3.1 464,270 + +2.3 464,271 - +3.0 464,271 - +1.9 464,276 + +3.2 464,649 + ECD_00424 0.26 +2.1 464,649 + ECD_00424 0.26 +1.9 464,649 + ECD_00424 0.26 +1.8 464,649 + ECD_00424 0.26 +3.2 464,649 + ECD_00424 0.26 +2.4 464,763 + ECD_00424 0.32 +2.4 464,987 + ECD_00424 0.44 +2.3 464,987 + ECD_00424 0.44 +2.2 464,988 - ECD_00424 0.44 +2.2 465,000 + ECD_00424 0.44 +1.9 465,000 + ECD_00424 0.44 +2.6 465,044 + ECD_00424 0.47 +3.4 465,044 + ECD_00424 0.47 +2.1
Or see this region's nucleotide sequence