Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00406 and ECD_00407 are separated by 300 nucleotides ECD_00407 and ECD_00408 are separated by 41 nucleotides ECD_00408 and ECD_00409 are separated by 163 nucleotides ECD_00409 and ECD_00410 are separated by 115 nucleotides
ECD_00406: ECD_00406 - excision repair protein, alkyltransferase-like protein ATL, at 445,028 to 445,417
_00406
ECD_00407: ECD_00407 - DUF1428 family protein, at 445,718 to 446,071
_00407
ECD_00408: ECD_00408 - putative membrane-anchored cyclic-di-GMP phosphodiesterase, at 446,113 to 447,663
_00408
ECD_00409: ECD_00409 - DUF1449 family inner membrane protein, at 447,827 to 448,297
_00409
ECD_00410: ECD_00410 - maltose O-acetyltransferase, at 448,413 to 448,964
_00410
Position (kb) 446
447
448 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 445.119 kb on - strand, within ECD_00406 at 445.264 kb on - strand, within ECD_00406 at 445.276 kb on - strand, within ECD_00406 at 445.289 kb on - strand, within ECD_00406 at 445.368 kb on + strand, within ECD_00406 at 445.697 kb on + strand at 445.698 kb on - strand at 445.710 kb on + strand at 445.710 kb on + strand at 445.711 kb on - strand at 445.711 kb on - strand at 445.724 kb on + strand at 445.724 kb on + strand at 445.725 kb on - strand at 445.725 kb on - strand at 445.828 kb on + strand, within ECD_00407 at 445.855 kb on - strand, within ECD_00407 at 446.069 kb on + strand at 446.069 kb on + strand at 446.186 kb on + strand at 446.187 kb on - strand at 446.283 kb on + strand, within ECD_00408 at 446.304 kb on - strand, within ECD_00408 at 446.405 kb on + strand, within ECD_00408 at 446.592 kb on + strand, within ECD_00408 at 446.648 kb on - strand, within ECD_00408 at 446.701 kb on - strand, within ECD_00408 at 446.724 kb on + strand, within ECD_00408 at 446.724 kb on + strand, within ECD_00408 at 446.995 kb on - strand, within ECD_00408 at 447.079 kb on - strand, within ECD_00408 at 447.162 kb on + strand, within ECD_00408 at 447.162 kb on + strand, within ECD_00408 at 447.209 kb on + strand, within ECD_00408 at 447.209 kb on + strand, within ECD_00408 at 447.210 kb on - strand, within ECD_00408 at 447.404 kb on + strand, within ECD_00408 at 447.404 kb on + strand, within ECD_00408 at 447.405 kb on - strand, within ECD_00408 at 447.534 kb on - strand at 447.565 kb on + strand at 447.676 kb on - strand at 447.678 kb on + strand at 447.678 kb on + strand at 447.698 kb on - strand at 447.698 kb on - strand at 447.699 kb on + strand at 447.700 kb on - strand at 447.739 kb on - strand at 447.739 kb on - strand at 447.739 kb on - strand at 447.804 kb on + strand at 447.813 kb on + strand at 447.814 kb on - strand at 447.814 kb on - strand at 447.814 kb on - strand at 447.817 kb on + strand at 447.823 kb on + strand at 447.828 kb on + strand at 447.829 kb on - strand at 447.829 kb on - strand at 447.829 kb on - strand at 447.829 kb on - strand at 447.972 kb on - strand, within ECD_00409 at 448.092 kb on - strand, within ECD_00409 at 448.170 kb on + strand, within ECD_00409 at 448.170 kb on + strand, within ECD_00409 at 448.170 kb on + strand, within ECD_00409 at 448.171 kb on - strand, within ECD_00409 at 448.171 kb on - strand, within ECD_00409 at 448.171 kb on - strand, within ECD_00409 at 448.171 kb on - strand, within ECD_00409 at 448.171 kb on - strand, within ECD_00409 at 448.175 kb on - strand, within ECD_00409 at 448.175 kb on - strand, within ECD_00409 at 448.287 kb on - strand at 448.379 kb on - strand at 448.428 kb on + strand at 448.429 kb on - strand at 448.497 kb on + strand, within ECD_00410 at 448.562 kb on + strand, within ECD_00410 at 448.562 kb on + strand, within ECD_00410 at 448.562 kb on + strand, within ECD_00410 at 448.602 kb on - strand, within ECD_00410 at 448.604 kb on + strand, within ECD_00410 at 448.611 kb on + strand, within ECD_00410 at 448.643 kb on + strand, within ECD_00410
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 445,119 - ECD_00406 0.23 +0.2 445,264 - ECD_00406 0.61 -0.9 445,276 - ECD_00406 0.64 -1.0 445,289 - ECD_00406 0.67 +0.5 445,368 + ECD_00406 0.87 -0.7 445,697 + -0.3 445,698 - -0.1 445,710 + +0.3 445,710 + +0.1 445,711 - +0.3 445,711 - -0.3 445,724 + +0.1 445,724 + -2.7 445,725 - +1.4 445,725 - -0.3 445,828 + ECD_00407 0.31 -0.4 445,855 - ECD_00407 0.39 -0.6 446,069 + +0.4 446,069 + +0.5 446,186 + -0.5 446,187 - -0.1 446,283 + ECD_00408 0.11 -0.1 446,304 - ECD_00408 0.12 -1.2 446,405 + ECD_00408 0.19 +0.7 446,592 + ECD_00408 0.31 -1.0 446,648 - ECD_00408 0.34 -0.6 446,701 - ECD_00408 0.38 -1.0 446,724 + ECD_00408 0.39 -0.5 446,724 + ECD_00408 0.39 +0.1 446,995 - ECD_00408 0.57 -0.5 447,079 - ECD_00408 0.62 -0.2 447,162 + ECD_00408 0.68 +1.4 447,162 + ECD_00408 0.68 -0.9 447,209 + ECD_00408 0.71 -1.1 447,209 + ECD_00408 0.71 -0.0 447,210 - ECD_00408 0.71 -1.3 447,404 + ECD_00408 0.83 +0.1 447,404 + ECD_00408 0.83 -1.0 447,405 - ECD_00408 0.83 -0.9 447,534 - -1.5 447,565 + +0.0 447,676 - +1.5 447,678 + +0.7 447,678 + -1.1 447,698 - -1.2 447,698 - -0.2 447,699 + -3.1 447,700 - -1.3 447,739 - +1.0 447,739 - +0.4 447,739 - -0.1 447,804 + +1.1 447,813 + -1.0 447,814 - -0.5 447,814 - +0.0 447,814 - +0.0 447,817 + -2.0 447,823 + +0.7 447,828 + +0.6 447,829 - +1.1 447,829 - +0.9 447,829 - +0.7 447,829 - -0.6 447,972 - ECD_00409 0.31 +1.5 448,092 - ECD_00409 0.56 -1.1 448,170 + ECD_00409 0.73 +0.6 448,170 + ECD_00409 0.73 +0.7 448,170 + ECD_00409 0.73 -0.5 448,171 - ECD_00409 0.73 -0.5 448,171 - ECD_00409 0.73 -1.7 448,171 - ECD_00409 0.73 -1.4 448,171 - ECD_00409 0.73 +0.3 448,171 - ECD_00409 0.73 -2.4 448,175 - ECD_00409 0.74 -0.6 448,175 - ECD_00409 0.74 -1.8 448,287 - +0.3 448,379 - -2.2 448,428 + -0.5 448,429 - +0.3 448,497 + ECD_00410 0.15 +0.7 448,562 + ECD_00410 0.27 -0.2 448,562 + ECD_00410 0.27 -0.7 448,562 + ECD_00410 0.27 -0.2 448,602 - ECD_00410 0.34 +0.4 448,604 + ECD_00410 0.35 +3.1 448,611 + ECD_00410 0.36 +1.0 448,643 + ECD_00410 0.42 -0.5
Or see this region's nucleotide sequence