Strain Fitness in Escherichia coli BL21 around ECD_00297

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00295 and ECD_00296 are separated by 102 nucleotidesECD_00296 and ECD_00297 are separated by 65 nucleotidesECD_00297 and ECD_00298 are separated by 51 nucleotides ECD_00295: ECD_00295 - putative cyanate transporter, at 329,527 to 330,681 _00295 ECD_00296: ECD_00296 - thiogalactoside acetyltransferase, at 330,784 to 331,395 _00296 ECD_00297: ECD_00297 - lactose permease, at 331,461 to 332,714 _00297 ECD_00298: ECD_00298 - beta-D-galactosidase, at 332,766 to 335,840 _00298 Position (kb) 331 332 333Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 330.558 kb on + strand, within ECD_00295at 330.575 kb on - strandat 330.729 kb on - strandat 330.765 kb on - strandat 330.957 kb on + strand, within ECD_00296at 331.013 kb on + strand, within ECD_00296at 331.013 kb on + strand, within ECD_00296at 331.163 kb on - strand, within ECD_00296at 331.287 kb on + strand, within ECD_00296at 331.570 kb on + strandat 331.601 kb on + strand, within ECD_00297at 331.602 kb on - strand, within ECD_00297at 331.602 kb on - strand, within ECD_00297at 331.623 kb on - strand, within ECD_00297at 331.703 kb on + strand, within ECD_00297at 331.707 kb on - strand, within ECD_00297at 331.707 kb on - strand, within ECD_00297at 331.709 kb on - strand, within ECD_00297at 331.808 kb on + strand, within ECD_00297at 331.808 kb on + strand, within ECD_00297at 331.821 kb on - strand, within ECD_00297at 331.824 kb on - strand, within ECD_00297at 331.902 kb on - strand, within ECD_00297at 331.974 kb on - strand, within ECD_00297at 332.008 kb on + strand, within ECD_00297at 332.009 kb on - strand, within ECD_00297at 332.009 kb on - strand, within ECD_00297at 332.220 kb on - strand, within ECD_00297at 332.381 kb on + strand, within ECD_00297at 332.381 kb on + strand, within ECD_00297at 332.710 kb on + strandat 333.052 kb on + strandat 333.061 kb on + strandat 333.061 kb on + strandat 333.061 kb on + strandat 333.061 kb on + strandat 333.062 kb on - strandat 333.062 kb on - strandat 333.062 kb on - strandat 333.062 kb on - strandat 333.062 kb on - strandat 333.062 kb on - strandat 333.062 kb on - strandat 333.062 kb on - strandat 333.138 kb on + strand, within ECD_00298at 333.288 kb on - strand, within ECD_00298at 333.291 kb on + strand, within ECD_00298at 333.353 kb on + strand, within ECD_00298at 333.354 kb on - strand, within ECD_00298at 333.428 kb on + strand, within ECD_00298at 333.454 kb on - strand, within ECD_00298

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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330,558 + ECD_00295 0.89 +0.3
330,575 - +0.4
330,729 - -0.8
330,765 - +0.2
330,957 + ECD_00296 0.28 +0.8
331,013 + ECD_00296 0.37 +0.6
331,013 + ECD_00296 0.37 +1.8
331,163 - ECD_00296 0.62 -1.4
331,287 + ECD_00296 0.82 +0.1
331,570 + -0.1
331,601 + ECD_00297 0.11 -0.8
331,602 - ECD_00297 0.11 -0.4
331,602 - ECD_00297 0.11 -0.6
331,623 - ECD_00297 0.13 -0.7
331,703 + ECD_00297 0.19 -0.8
331,707 - ECD_00297 0.20 -0.0
331,707 - ECD_00297 0.20 -0.3
331,709 - ECD_00297 0.20 -2.0
331,808 + ECD_00297 0.28 +0.5
331,808 + ECD_00297 0.28 -0.2
331,821 - ECD_00297 0.29 +1.1
331,824 - ECD_00297 0.29 -0.7
331,902 - ECD_00297 0.35 +0.0
331,974 - ECD_00297 0.41 +0.8
332,008 + ECD_00297 0.44 -0.0
332,009 - ECD_00297 0.44 +0.4
332,009 - ECD_00297 0.44 -0.7
332,220 - ECD_00297 0.61 -0.2
332,381 + ECD_00297 0.73 -1.5
332,381 + ECD_00297 0.73 -0.4
332,710 + +0.1
333,052 + -1.4
333,061 + +2.5
333,061 + +0.3
333,061 + +1.0
333,061 + -0.4
333,062 - +3.8
333,062 - +0.5
333,062 - +1.3
333,062 - +1.3
333,062 - -1.1
333,062 - -2.1
333,062 - +2.1
333,062 - -0.7
333,138 + ECD_00298 0.12 +0.5
333,288 - ECD_00298 0.17 -1.8
333,291 + ECD_00298 0.17 +0.6
333,353 + ECD_00298 0.19 -0.2
333,354 - ECD_00298 0.19 +1.2
333,428 + ECD_00298 0.22 -0.5
333,454 - ECD_00298 0.22 -1.3

Or see this region's nucleotide sequence